KEGG   Gossypium hirsutum (upland cotton): 107891849
Entry
107891849         CDS       T04793                                 
Name
(RefSeq) WD repeat-containing protein 43-like
  KO
K14546  U3 small nucleolar RNA-associated protein 5
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    107891849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ghi03009]
    107891849
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    107891849
SSDB
Motif
Pfam: WD40 Utp12 ANAPC4_WD40 PQQ PQQ_2 DUF3634 Rpn13_ADRM1_Pru Cwf_Cwc_15 DUF2076 DUF2457
Other DBs
NCBI-GeneID: 107891849
NCBI-ProteinID: XP_016672262
UniProt: A0A1U8I1Z7
Position
D09:31861658..31868267
AA seq 627 aa
MGSLNIRDVLTAFSPSLDYFAISSGDGRIKIWDTLKGQIQTEFADIVSSEATNIYAKAER
GHLSIDYKCMKWLSFDKKKKRKLGSSLLILGTGSGDVLALDVSAGQLKWKVSDCHPGGVS
AIAFATNGSCIYSSGADGMICKIDSLTGNLLGKFRASTKSISCMAVSCDGKTLVTAAGQL
KSFHCSNHKKIQKFTGHPGSVRCMIFTEDGKFILSSAAAERYIAVWRTDGGKKQSASCVL
AMEHPAVFVDSKCVNGDIYVLAISETGVCYFWYGQDVEALCNAKPTKLSISLEDGLSKPH
KGALPMIFAAKLQGVAKQASVHAFLAHGLLVKPLFQKMVVQYGADMLLSSSQDGVLLPRS
QSLNKSKKGLDSQNRVIALDRANAEDAALPIPKIFYLHEEKEDRHRSFSVGTDDVMTDSI
DHGSQPKFVDGKDASIKLDANSKALCMEDQLRPLGILDTCNSDSIVFDGINLEANLPPKK
MRAAISSMEPGDAHKLLEDLVKLWQSRSCSGKYVLPWIYSLLLTHGHLMSQESVTQMLNS
LLKNTKSRGLALQPLLQLSGRLQLVTTQIDKAAQSRSQYSTSDHKMDESEDDDDDDDDDD
DDDDDDDVDDVLYGEEDESQISSDDDN
NT seq 1884 nt   +upstreamnt  +downstreamnt
atgggatccttgaatattagagatgtcttgacagcatttagtccttctttggactacttt
gctattagttctggagatggtcgtattaagatttgggacactttgaagggtcaaattcaa
actgaatttgcggacattgtatcaagtgaggcaacaaacatatatgctaaggcagaaaga
gggcatctttcaattgattacaaatgtatgaagtggttgtcttttgacaaaaagaagaaa
aggaaacttggaagttctttgctcatattgggaacaggaagtggtgatgtcttagcactc
gatgtgtctgctggtcagctgaagtggaaagttagtgattgccatcccgggggtgtcagt
gccattgcatttgctacaaatggctcttgcatttatagttctggggcagatgggatgatt
tgcaaaatcgattcattgactggaaatctattagggaagttcagagcttctacgaagtca
atatcctgtatggctgtctcatgcgatggaaagacgttagtcacagcagctgggcagttg
aagtcttttcattgttctaatcacaaaaagatacagaagtttactggacatcctggatct
gttcggtgcatgatatttaccgaagatggaaaatttatcctatcatctgctgctgctgaa
agatatattgctgtatggagaacagatggaggcaaaaagcagtccgctagttgtgtttta
gcaatggagcaccctgctgtctttgtagatagcaaatgtgttaatggtgatatctatgtt
cttgcgatttcggaaactggtgtttgttatttttggtatggtcaggatgttgaggcactg
tgcaatgccaagcccacgaagctttcaatatctttagaagatggtttgtctaaacctcac
aaaggtgcattacctatgatattcgctgcaaaattgcaaggcgttgccaagcaagcatct
gtgcatgcatttcttgcccatggtttgttggtaaagccattgtttcagaaaatggtcgtg
cagtatggtgcagacatgttattgagtagctctcaggatggagtccttttacctaggagt
caatcccttaacaaatcaaagaaagggctcgattcacagaatagagtaattgcattggat
cgtgcaaatgccgaggatgccgcacttccaatcccgaagattttttatcttcacgaggaa
aaagaggatagacatagaagtttcagtgttggtactgacgatgtgatgactgattccatt
gaccacgggagccaaccaaaatttgtggatggaaaagatgcttcaataaaattagatgcc
aattcgaaagcactttgcatggaggatcagttaagaccactaggaatacttgatacatgt
aactctgattctatcgtatttgatggtattaatcttgaagctaatttgccaccaaagaag
atgagagcagctatttcttctatggagcctggtgacgctcataagttgcttgaagacttg
gtgaaattgtggcaatcaaggtcatgtagtggaaagtatgttcttccgtggatatatagt
ttattgctgactcacggtcatcttatgtctcaagaatccgtaacccagatgcttaattcc
ttattgaagaataccaaatcaagagggttggcccttcagcctttgctacaattatctggg
cggttacagctagtaacaacacagattgacaaggcggctcagagcagaagtcaatactcc
acaagtgatcacaaaatggatgaaagtgaagatgatgatgatgatgatgatgatgatgat
gatgatgatgatgatgacgatgtagatgatgttctttatggggaagaagatgaatcccaa
ataagtagtgatgatgataattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (22)   

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