KEGG   Gossypium hirsutum (upland cotton): 107893529
Entry
107893529         CDS       T04793                                 
Name
(RefSeq) DNA polymerase delta catalytic subunit-like isoform X2
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03030  DNA replication
ghi03410  Base excision repair
ghi03420  Nucleotide excision repair
ghi03430  Mismatch repair
ghi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107893529
   03410 Base excision repair
    107893529
   03420 Nucleotide excision repair
    107893529
   03430 Mismatch repair
    107893529
   03440 Homologous recombination
    107893529
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ghi03032]
    107893529
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107893529
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     107893529
DNA replication proteins [BR:ghi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    107893529
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      107893529
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     107893529
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol DNA_pol_B_2 divDNApol
Other DBs
NCBI-GeneID: 107893529
NCBI-ProteinID: XP_016674049
UniProt: A0A1U8IE19
Position
A13:complement(94718584..94728881)
AA seq 1097 aa
MNKGGNSRKRPPPPSSHQPSPALKHQATTPTPPPPSTEEDFVDEDVFFDETLMGEEDVES
LILRDFEERQALASRLSKWARPPLSDAYISQSRSIVFQQLEIDYVIGESHKNLLPDSSCQ
AAIIRIFGVTGEGHSVCCLVHGFEPYFYISCPPGMGPDDISHFHQTLEGRMKEMNRNSKV
PKFVRRIELVQKRSIMYYQQQKSQPFLKIVVALPTMVATCRGILDRGIQIDGLGMKSFIT
YESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTAKNMSYCQLEFDCLYSDLISHAPEGEF
SKMAPFRILSFDIECAGRKGHFPEPSQDPVIQVANLVTLQGEDQPFIRNVMTLKSCSPIV
GVDVMSFDTEKEVLLAWREFIREVDPDIIIGYNICKFDLPYLIERAQTLGIAEFPILGRI
RNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSE
QKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMYVYNYVEMARVTGVPIS
FLLSRGQSIKVLSQLLRKSKQKNLVIPNVKQAGSEQGTFEGATVLEAKAGFYEKPIATLD
FASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPECVNRTPSGETFVKPELQKGILPEILEE
LLAARKRAKADLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLEISSSVTS
YGRQMIEHTKKLVEDKFTVLGGYEHNAEVIYGDTDSVMVQFGVSDVEAAMNLGREAAEHI
SGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTNPQKFDKMDTKGIETVRRDNCLLVKNL
VTECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVEL
AERMRKRDPATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQIS
KPLLRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALICNSDRT
LCSHCKGREAELYYKTVSQVSELEELFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKK
AQKDMVEAKRQLDRWNF
NT seq 3294 nt   +upstreamnt  +downstreamnt
atgaacaagggcggcaattcacggaagaggccgccaccgccttcttcacaccagccatct
ccggctttgaagcaccaagcgacgactccgacgcctcccccaccgtcgacggaagaagat
ttcgtcgatgaagatgtcttctttgacgaaaccctgatgggggaagaagacgtggaatcc
ctaattctacgcgacttcgaggaacgtcaagctctcgcttctcgtctttccaagtgggct
cgccctcctctctctgatgcctacatttcccagtctcgtagcattgttttccaacaattg
gagattgattatgtgattggagagagtcataaaaatttgctacctgattcttcttgtcaa
gctgccattatccgaattttcggggttactggagaaggacatagcgtttgttgtcttgtt
catggatttgagccgtatttctacattagctgccctccaggaatgggtcctgatgatatc
tcccattttcatcaaacgcttgagggcaggatgaaggagatgaacagaaacagcaaggta
ccgaagtttgttcggcgtattgaattggttcagaaaagaagtattatgtattaccagcaa
caaaagtctcaaccatttctcaagattgtagtggcattgccaacaatggttgctacctgt
cgtggcattcttgatcgaggcatacaaattgacggccttggtatgaagagcttcattaca
tatgaaagcaatgttctttttgcactacgtttcatgattgattgcaatattgttggtggt
aattggattgagataccggctggtaaatataagaagacagcgaagaatatgtcctactgc
caattggagtttgattgcttgtattcagatttgattagccatgcccctgagggggaattc
tcaaagatggctccatttcgcatattgagttttgatatagagtgtgctggtcgcaaaggt
cattttccagagccttctcaggatcctgtaatccaggtagcaaatctagttactttgcaa
ggagaagatcagccattcattcgtaatgtcatgacccttaagtcatgctccccaatagtt
ggtgttgatgtaatgtcttttgatacagaaaaagaagtcttgcttgcttggagggaattt
atccgtgaagtggaccctgatattataattggatataacatttgcaagtttgatttgcca
tatcttattgagagagcacaaacacttggaatagcagagtttccaatacttggccgcatc
aggaatagtagggttcgtgtaaaagatacaacattttcttcaagacagtatggaactagg
gagagcaaagaagttactgtggaggggagagttcaatttgatttgctccaggctatgcaa
agggactacaaactaagttcttattcattgaattcagtttcagcacactttctatctgag
cagaaagaggatgttcaccattcaataatatcagatcttcagaatggaaatgctgagact
aggaggcgtcttgctgtctattgtttgaaggatgcttaccttccccaaaggcttttggat
aaactaatgtatgtttacaattatgttgagatggctcgtgtcacaggtgtgcctatatct
tttcttctttctagaggacaaagcatcaaggtgctttctcaacttcttaggaagtctaag
cagaagaaccttgttattccaaatgtcaaacaagcaggatctgaacagggaacgtttgaa
ggtgcaactgtgttggaagcaaaagcaggattctatgaaaagccaattgcgacactggat
tttgcgtctttgtatccatcaattatgatggcatataatttatgctattgcacattggtg
actcctgaagatgttcgcaaactcaacctcccaccagaatgtgttaacagaactccatct
ggtgaaacatttgttaaaccagagctacagaaggggatacttccagaaatattggaagag
ctattagctgctcgtaaacgagcaaaagctgatttgaaggaagcaaaggatccacttgag
aaagctgttctagatggccgacagctggccctgaaggtaagtgcaaattctgtatatgga
tttacaggagctactgttggtcagttaccatgtttagagatttcttcgagtgttacaagc
tatggtcgccaaatgattgagcacaccaagaagcttgttgaagataaatttacagtgcta
gggggctatgaacacaatgctgaggttatatatggggacacagattcggtgatggtacaa
tttggtgtgtctgatgtagaagcagcaatgaacttggggagagaagctgcagaacacatc
agtggaacttttacaaaacccatcaagctagagttcgagaaggtttattatccctatctt
ttgattagcaagaaaagatatgctggtttattttggacaaatccacaaaagtttgacaaa
atggacactaaaggcatcgaaactgttcgaagagacaattgtttattggtcaaaaacctt
gtaactgaatgcctgcacaaaatactgattgatagagatattcctggtgcagttcaatat
gtcaagaataccatttcagatcttctcatgaatcgaatggatttgtcacttttggttatt
actaagggtctgacaaaaactggagatgattatgaggtaaaagctgctcatgttgaactt
gctgaacgtatgcgcaagcgagatcctgcgactgctccaaatgttggggatcgggtgcct
tatgtcattattaaagccgcaaaaggcgccaaggcttatgagaggtcagaggacccaatc
tatgtgctagaaaataacatccccatagatcctcaatattaccttgaaaatcaaattagc
aagccgcttttaagaatttttgagcccattttaaagaatgctagcaaggaacttctccat
gggagtcacacaagatccatttccatatcaactccgtcaaacagtggaataatgaaattt
gcaaagaaacaacttagttgtattggctgcaaagcgctaatttgcaattcagatcgaaca
ctctgttcacactgcaagggaagagaggcagaactttattataaaacagtttctcaagtg
tcagaactagaggagctttttgggaggctatggacacagtgccaagagtgtcaaggctct
cttcaccaggatgtgctctgcactagtcgggattgtccaatattttaccggagaaagaaa
gcacagaaagatatggtagaagccaagcggcagttggaccggtggaacttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (5)   
   Pfam (5)   
All databases (31)   

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