KEGG   Gossypium hirsutum (upland cotton): 107893651
Entry
107893651         CDS       T04793                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107893651
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107893651
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107893651
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     107893651
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965 DUF1043
Other DBs
NCBI-GeneID: 107893651
NCBI-ProteinID: XP_016674191
UniProt: A0A1U8I7K4
Position
A13:74884363..74892745
AA seq 886 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKISASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLSVKKGKMRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFDDVDELYSSLPLDKVES
LEDLVAIGPLSKGGPILKTSLAASMSQLPQGGSSQEHVEDTASQDSNSDIAKTPPPKSST
INSSAAATPAGSHVTPAPLNLPPHSLSGASSPSVLPDSNSAQGLLESTGTTNPPPVNLSN
ATKEEDITNFPGRRSSPSLADTEVRGIGRGLSGQPSSTIPLVSGSVASGNGALGAVPPAS
DMAKRNILGVDERLGNSSMGQSLTSPISNRMILPQAAKSNDGNAPVDSSNPNESAGLPGR
AFSPSMVSGMQWRPGSSFQNQNELVQFRGRTEIAPDIREKFLQRFQQVQQQGHSNLLSSM
SPLAGGNHNQFSAQQQSPLMQQFNPQSSCFSIPPGLGHGGQAPGLNSVTSASLQQQPNSI
HQQSGQQALATSVPKDADVGVAKVEEQQPQSLPDGSSSEAIQTSGLAKNLMNEDDLKAPY
AIDSPAAVSGSLTEPARNIRDIDLSPGQPLQYNQSSSGLGVIGRRSVSDLGAIGDSLSGS
TNSGGMHDQLYNMQMLEAAYYKIPQPKDSERVRSYTPKHPAATPASYPQVQAPIVNNPAF
WERISMDGYGTGTDTLFVAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIA
TDEFEQGTYVYFDFHVANDDHQHGWCQRIKTEFIFEYNYLEDELIV
NT seq 2661 nt   +upstreamnt  +downstreamnt
atgggagcgagtcgcaagctacaaggagagatcgatcgtgttctcaagaaagtccaagaa
ggtgtcgatgtgttcgatagcatctggaacaaggtttatgatactgataatgcgaatcag
aaggagaaatttgaggctgacttgaagaaggaaatcaagaagctgcaaaggtacagggac
cagatcaagacttggattcaatcgagcgagatcaaggataagaaaattagtgcctcttat
gagcaggccctggtggatgctcggaagcaaattgagcgtgaaatggaaagatttaagatc
tgtgagaaggagactaagacaaaagcattttctaaagaaggcttgggccaacaacccaaa
actgatccgaaggagaaggctaagtcagagacaagggattggttgaacaatgtggttgga
gagttagaatcccagattgatagttttgaagctgagattgaggggctgtctgtgaagaaa
ggaaagatgagaccacctagactgacacacttggagacatcaattacacgacacaaagct
catataatgaagttagaattgattttgagactattggacaatgatgaattgagtccagag
caagtcaatgacgtgaaagacttcttggatgattatgtggaacgaaatcaggaggacttt
gatgaatttgatgatgttgatgagctctacagctcattacctctagacaaggtggagtct
cttgaagatctagttgcaattggcccactttccaagggtggtccaatcttgaagacatct
ttggcagcatcaatgtctcaattgcctcagggtggttcctctcaggagcatgttgaagat
acagcttcccaggatagtaattctgatatagcaaagaccccacctccaaaaagtagtaca
attaattcttctgctgcagcaacaccagctgggagccatgtaacccctgctccactgaat
cttccaccacatagtttgtctggtgcttcatctccttcagttcttccagattcaaattct
gcccaaggcctcttggaaagcactggcaccaccaatcctcctcctgtaaatttatctaat
gctacaaaggaagaagatatcacaaacttccctggccgtaggtcatctccatcccttgct
gatactgaagtacgaggcattggtagaggtctatccggtcagccttcatctactataccc
cttgtttctggaagtgtggcttctggtaacggggcccttggtgctgtccctcctgcctct
gacatggcaaaaagaaatattttgggagttgatgagagacttgggaatagtagcatgggg
caatctttgacatcacctattagtaacagaatgatcttgcctcaggcagccaagtcaaat
gatggaaatgcacctgttgattctagtaatcctaacgagtctgctggactacctggcaga
gcattttctccttcaatggtttctggcatgcagtggaggcctggaagctcgtttcagaat
caaaatgagctggtgcagtttcgtggaagaactgagatagctcctgatataagggaaaag
tttttgcaacggttccagcaagtgcagcagcaaggccatagcaacctgcttagcagcatg
tctcctcttgctggaggaaatcataatcagttttctgcacaacaacaaagccctctcatg
cagcagttcaatcctcaaagctcgtgtttctcaatcccacctggtctgggacatggtggc
caagcacctggtcttaatagtgttacctctgcgagcttacagcagcaaccaaactcaatc
caccagcagtctggtcagcaggcattggcaacaagtgttcctaaggatgctgatgttggc
gttgcaaaagttgaggaacaacaaccgcagagtttacctgatggttcaagttctgaagct
attcaaacttctgggcttgccaaaaatctcatgaatgaagatgatttgaaagctccatat
gcaattgattctcctgctgctgtctcaggctctttgacggaacctgctcgaaatattagg
gatattgatctttctcctggacaacccttacaatataaccaatcttctagtggtcttggt
gttattggccggagaagtgtttccgatcttggtgccattggtgacagcctcagtggttca
acaaattctggaggaatgcatgatcaattgtacaatatgcagatgcttgaggctgcatat
tacaaaattccccaacctaaagactcagaacgagtgaggagctatactccaaagcaccct
gcggcaacacctgctagttaccctcaagttcaggcacccatagtgaataatcctgccttc
tgggaacgcataagcatggatggatatggcactggcactgatacactgtttgttgcattt
tattatcaacagaacacttatcaacaatatctagctgcaaaggagctgaagaagcaatct
tggagataccatagaaaatacaacacatggtttcagcggcatgaggaaccaaaaattgct
actgatgaatttgaacagggaacctatgtatactttgattttcacgtggcaaatgatgac
caccaacatggatggtgtcagagaatcaagactgagttcatctttgagtataactatctg
gaagatgaacttatagtatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (17)   
   UniProt (1)   
   RefSeq(pep) (16)   
DNA sequence (20)   
   RefSeq(nuc) (16)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (49)   

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