KEGG   Gossypium hirsutum (upland cotton): 107912855
Entry
107912855         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107912855
  09124 Replication and repair
   03420 Nucleotide excision repair
    107912855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107912855
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107912855
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107912855
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     107912855
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107912855
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R MIF4G_like_2
Other DBs
NCBI-GeneID: 107912855
NCBI-ProteinID: XP_016696697
UniProt: A0A1U8K2J8
Position
D11:complement(20103038..20111506)
AA seq 1839 aa
MDLRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQDVEEPVKKSRGGCGAQQPKLTI
DGMKMIAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LLRTSAWHSESETGSITPGDTQVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISKAKDDVKQLIVKAQNKDL
EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFDRVFRYKIDDENWNPTSYMLPEHIEDLRTIQELRDVFDAEVNKLEADRY
QLGTEIVVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV
PGADPLSVEAQKNSTLFFCILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP
GEMIGCVASQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE
VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK
TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD
YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT
PYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYTPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYS
PSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQ
YSPSAGYSPSAPGYSPTSTSQYTPSNKDGRSNKDDRSKR
NT seq 5520 nt   +upstreamnt  +downstreamnt
atggatttgcggttcccttactctcccgcggaagtcgccaaggttcgcgtggtccagttc
ggcatcctcagccccgacgaaattcggcaaatgtcagtggtgcagattgagcacagtgaa
acgacggagagaggaaaacccaaagtaggaggtttaagtgacccgcgactgggcacgatt
gacaggaaattaaagtgcgagacgtgtacggctaacatggcagagtgtccagggcatttt
gggcacttggagcttgccaagcctatgtttcatattgggtttatgaaaactgtgcttagt
attatgagatgtgtctgcttcaattgctccaagattctcgctgatgaggaagatcataaa
tttaagcaagctttgaagataaaaaatccaaagaacagactaaaaaaaattttagatgca
tgcaagaataaaactaaatgtgagggtggtgatgaaattgatgtccaaggtcaagatgtg
gaggaaccggtaaaaaagagccgtggtggctgtggtgctcagcaaccaaagttgactatt
gacggtatgaagatgattgctgagtacaaggcccaaaggaagaaaaatgatgacccggaa
caacttcctgaacctgtggaaagaaaacagactctaacagctgaacgggttcttagtgtc
ttaaagaggataagtgatgaggactgccaactattaggtttgaatcccaagtatgcccgt
ccagattggatgattcttcaagtacttccaatacctccacctcctgtgagaccctctgtg
atgatggatacatcctctaggagtgaggatgacttaacacatgcattggctatgatcatt
cggcacaatgagaacttgaggagacaggagaggaacgggtcacctgcacatatcatatct
gaatttgcacagttgttgcaatttcatgttgcaacatattttgacaatgagttacctgga
cttccaagggctacacagagatctgggagacctattaaatctatttgtagtaggcttaag
gcgaaagagggccggattaggggtaacttgatggggaaaagggttgacttttcagctcga
acggtaattacaccagatccaaatatcaatattgatgagcttggagtaccttggagtatt
gctttaaatcttacatatccagaaactgtgacaccatataacattgaaaggttgaaagaa
cttgtggaatatgggcctcatcctccacctggaaagactggtgctaagtacatcataaga
gatgatggacaaaggcttgatcttcgttacctaaagaaaagcagtgatcatcacctagaa
cttggttataaggtggagcggcatttaaatgatggggattttgtcctttttaatcgtcaa
cctagtctccataaaatgtcaatcatgggccacagaattaggatcatgccatactcaacg
ttccgtctaaatttgtcagttacttcaccatacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcaatcatttgagacaagagctgaggttttggagctcatgatggtg
cctaagtgcattgtgtctcctcaatcaaataggccagttatggggattgtccaggataca
cttttaggatgccgtaaaatcaccaagagggataccttcatagaaaaggatgttttcatg
aatatattgatgtggtgggaagactttgatgggaaggttcctgcacctgcaattctaaag
ccacggccactttggacggggaagcaggtttttaatcttatcataccaaaacagataaat
ctattgagaacttctgcatggcattcagaaagtgaaactgggtctatcacccctggggat
actcaagtgcgaatagaaaaaggggaggtgctatctggcactctttgcaagaaaacactt
ggaacatcttctggaagtcttatacatgtaatttgggaagaggtaggtccagatgcagcc
cggaaatttttgggacatacacaatggcttgtcaattattggctgctgcagaatgccttt
agtattggtatcggggatacaatagctgatgcatcaacaatggaaaaaattaatgaaacc
atttctaaagccaaagacgatgtgaaacagcttattgttaaagcccaaaacaaggattta
gagcctgaacctggaagaactatgatggagtcctttgaaaacaaagttaaccaggtgttg
aataaagctcgtgatgatgcaggaaacagtgcacaaaaaagtttgtctgaaagcaataac
ctgaaggcgatggttactgcaggatcgaagggaagtttcattaacatatcccaaatgaca
gcttgtgttggtcagcagaatgttgagggaaagcgaataccatttgggttcatagatcgt
acattgcctcattttaccaaggacgattatggccccgaaagtcgtggttttgtggagaac
tcttacctgcgtggtttgaccccacaagagttcttttttcatgccatgggtggtagagaa
ggtctcatagatactgcagttaagacttctgagactgggtacatacagaggcgactcgtg
aaggctatggaggatattatggttaaatatgatggaactgtgaggaactcattgggggat
gttattcaattcctctacggtgaagatggtatggatgctgtatggatagaatctcagaag
ctggattctttgaagatgaagaaatcagaatttgatagggtcttcagatataaaatagat
gatgaaaactggaatccaacttcttacatgttaccagagcatattgaagacttgagaacc
atccaagaattgcgtgatgtgtttgatgctgaagttaataaacttgaagctgatagatac
cagcttggaacagagattgtagtcacaggtgatagtaattggcctttgcctgttaacttg
aagaggcttatctggaatgcacagaagactttcaaggttgactttcgaagggtgtcagat
ttgcatccagtggaaattgtagattctgttgataagctccaggaaaggttaaaggttgtt
ccaggtgcggatcctctgagtgtggaagcccaaaagaattctaccctcttcttttgcatt
ttgcttcgcagtactttggctagtaaaagggtgttgcaggagtatagattgacgaaagaa
gcatttgagtgggttattggagaaatagagtcacggttcttacagtccctagtggcaccc
ggtgagatgataggttgtgttgcttctcaatcaattggtgagcccgctactcaaatgact
ctcaacaccttccactatgctggtgtgagtgcaaagaatgttacccttggtgtccccagg
ttgagggaaattattaatgtagccaagaaaatcaagacaccttctctttctgtctacctc
tctcccgaagctagtaaaactaaggagaaggccaagaatgtccagtgtgctttagaatac
actactcttcggagtgttacgcatgctactgaagtatggtatgatccggatccaatgagc
acaattattgaggaggatatagacttcgttaagtcttactatgaaatgccagatgaagag
gttgcaccagaaaagatctccccttggctgcttcgaatagagttgaatcgtgagatgatg
gtcgataagaaattgagtatggctgacatagctgagaagatcaacctggaatttgatgat
gatttgacttgcatatttaatgatgacaatgcagagaagttgatcttacgtatccgcatc
atgaatgatgaagccccaaagggtgaattgaatgacgagtctgctgaggatgatgtgttc
ttgaagaagattgagagtaacatgctgacagaaatggcccttcgaggtatcccagacatc
aacaaggtgttcattaaacatagtaaagcaagcaaatttgatgaggctgatgggtataag
actggggaggagtgggtgctggatacagaaggtgtcaatctcttggctgtcatgtgccat
gaagatgttgatgcaaggagaacaacaagcaatcacttgattgaagttattgaagttctt
ggaatcgaagcagttcgtcggtccttgttggatgaattgcgcgttgtgatatcgtttgat
gggtcttatgtgaattatcggcatctagctatcctttgtgatacaatgacctatcgtggt
cacttgatggccatcacccgtcatggcatcaaccgtaatgatacagggcctatgatgagg
tgctcatttgaagaaactgttgatattctcctcgatgctgctgtttatgccgagtcggat
tatttgaggggtgtaacagagaatataatgttgggccagcttgcaccaattggcacggga
gactgtgccttgtatctcaatgatgagatgttgaagaatgccattgaacttcagctacct
agttacatggaaggtctggaatttggcatgacacctgcacgttctccagtgtcaggaact
ccttatcatgaaggcatgatgtctccaagttacttgctgagcccaaatctccgtctctca
cccatttcagatgcacagttctcgccttatgttggtggaatggcattctctcctacgtca
tcccctggttacagcccatcatctcctggatacagtccgtcatcacctggttacagtcct
acctctcctggttacagtcctacatctcctgggtacagtcccacctctcctggttacagc
cccacatcacctacttacagtcctagctcaccaggatacagtccgacaagtccagcctac
tctcctaccagcccctcatattctccaacctcaccaagctatagccctacctctccaagt
tacagccctacatctccaagttacagtcccacatcccccagttacagtcccacttcacct
agctacagccccacttcacccgtatatagccccacttcacctgcatatacccccacttct
cctgcatatagccccacttctccatcatacagcccgacatctccatcatacagccctaca
tctccttcgtacagccccacatctccttcctatagccccacatctccttcctatagcccc
acttctcctgggtacagtccaacctcaccaagttacagtcccacatcaccaagctatagc
cctacctctccaagttacaacccgcagtcagccaagtacagtccgtctctggcatactca
ccaagtagtccaaggttgtctccttccagtccttacagtccaacatcacctaattacagt
ccaacatcaccatcatactcaccaacttctccatcttattccccttcaagtccaacatac
agtcctagcagcccatacaactctggagtgagcccagactacagcccaagctcgccacag
tacagtccaagtgctgggtattctcctagtgcccctggatattcaccaacatcaactagt
cagtacactccaagcaacaaggatggtagaagcaataaggatgacaggagtaaacgataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (34)   

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