KEGG   Gossypium hirsutum (upland cotton): 107917334
Entry
107917334         CDS       T04793                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107917334
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107917334
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107917334
   03041 Spliceosome [BR:ghi03041]
    107917334
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107917334
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107917334
Spliceosome [BR:ghi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107917334
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 107917334
NCBI-ProteinID: XP_016702182
UniProt: A0A1U8KMG3
Position
D08:complement(5234768..5237567)
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGPGGRQPKGAGRGLDD
GARTTSGGRGRGGSGGKNTGGRGSGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttcctctttctctactaaaaacggcacagggtcatcctatgttggtggaactgaaa
aatggggagacatataatggacatttggtcaattgcgacacttggatgaacatccatctt
cgtgaagttatctgtacttcaaaggatggagacaggttttggagaatgcctgaatgctat
atccgtggaaatacaattaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaaacaaagagtcgtgcagataggaagcctcctggtgtaggccgtgggagaggcagg
ggtcgagaagatggtcctggtggaaggcaaccaaaaggagctgggcgtgggctagatgat
ggtgctaggactacaagtggaggccgagggaggggtggttcaggtggaaaaaacactgga
ggcagaggtagtggccggggtcggggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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