KEGG   Gossypium hirsutum (upland cotton): 107923959
Entry
107923959         CDS       T04793                                 
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107923959
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107923959
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107923959
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     107923959
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 107923959
NCBI-ProteinID: XP_040937254
Position
A11:complement(20612689..20620318)
AA seq 802 aa
MDRSDGKLHNNFSSLSSSVSGFADNALFDASQYEFFGQNAMEEVELGGLEDDEQDAPVFA
SPEDDEYHLFDKGEVVGLGSLSDVDDLATTFAKLNRVVTGPRNPGVIGDRSGSFSRESSS
AADWAQDGEYVNWMDQHLFDADDAQDGKRWSSQPQPYARVSDSKPLYRTSSYPEQQPQLH
RFSSEPIFGPKSNFISFPPPGSKCQQSSPAHLNISALSSGSQPPFSAASLSPLSNSSLHL
AGLSHGLHCGGNVPQLTSPGLSFSSRSHNHWVNHSGLLHGDHAGLLHYMLQQQIPHQNGL
ISPQLMSPQQQRLHHSVQPSLAHFAALQSQLYNAHPPSHKLMLGLADIRDQRTKSSQRKR
QSSRISQQNSDTGSQKSESGLVQFRSKYMSAEEIESILKMQHAATHSNDPYVDDYYHQAC
LAKRSFGSRGKHNFCPSHLKDLHSRSRNSGEQHLHLHADALGKAPLSSIRRPRPLLEVDP
PLGSGDGGSEQKTERPLEEEPMLAARITIEDGLSLLLDVDDIDRLIQFSQPQDGGIQLRR
RRQILLEGMAASLQLVDPLSKGAHAVKCVAKDDIVFLRLVSLAKGRKLVTRFLQLLIPGS
ELVRVVCMAIFRHLRLLFGGLSSDLEAAETTTNLAKTVSTCVNGMDLRALSACLVAVVCS
SEQPPLRPLGSPAGDGASVILKSVLERATQLLSYPSGNCSMPNYAFWRASFDEFFTLLTK
YCVNKYETIGQSIQNQSPTMEVIGSEAMRQEMPCELLRSSLPHTNEAQRKLLMDFSQRSV
PMNGANSHAGSTSQINSESVRG
NT seq 2409 nt   +upstreamnt  +downstreamnt
atggatcgatccgatggcaaacttcacaacaacttctcctccttatcttcctcagttagt
ggttttgcagataatgcgctttttgatgcatcccagtatgaattttttggtcaaaatgct
atggaagaagtggagttggggggtctagaagacgatgaacaggatgctcctgtgtttgct
tcccctgaagatgatgagtaccatttgtttgataagggagaggttgtaggtttaggctct
ttatctgatgtggatgatctagctactacttttgcaaagttgaatagagttgttactggg
ccaagaaatccaggagttattggtgatagatctggatctttttcaagggaaagttcctct
gctgctgactgggctcaagatggagaatacgtaaactggatggatcagcatctttttgat
gcagatgatgctcaagacggcaagagatggtcttcgcagccacaaccatatgctcgtgtt
tctgactcaaagcctttgtatagaacttcttcatatcctgagcagcaaccccagctgcat
cgtttctcaagtgaaccaatttttgggccaaaatcgaacttcatatctttccctcctcct
ggtagcaaatgccagcagtcttcacctgctcacctcaatatttctgctctttccagtgga
tctcagccacccttctctgcagcaagcctctctccattgtccaactctagtcttcatctg
gctggtttatcccatggattgcattgtggtggtaatgtgccccagttaacatctcctggc
ctatcttttagtagcaggtcacataatcactgggttaaccactccggtctattacatgga
gatcatgctggtcttttgcattatatgttgcaacagcaaattcctcatcaaaatggtcta
atttccccacagttaatgtcaccacaacagcagagactgcaccattcggttcaaccttct
ttggctcattttgcagctttgcaatctcagctgtataatgctcatcctccatcacataaa
ttgatgcttggactagctgatattagggatcaacgaactaaatcatcacaaagaaagaga
cagagctcgcgtatttcccagcaaaactctgatactggtagccagaaaagtgagagtggg
ttggtgcaattcagatccaagtatatgtctgctgaagagatagagagcattcttaagatg
cagcatgctgccacacatagtaatgatccttatgtagatgattattaccaccaagcttgt
cttgccaaaagatcttttggatccaggggtaaacataatttttgtccatctcacctgaag
gatttacattctcgatcccgtaacagcggagagcagcatttgcatctacatgctgatgca
cttgggaaggcccccctctcttccattcgaagacctcgtcccctgcttgaagtcgatcct
cccttaggttcaggtgatggaggttctgaacagaaaactgagaggcctttagaggaggaa
cctatgcttgcagctagaatcaccattgaagatggtctgtctcttcttcttgatgtagat
gatattgaccggctcatacaatttagtcaaccccaggatggtgggatccagctcagacgg
aggcggcagatcctgcttgaaggtatggcagcatcactgcagcttgttgatccacttagc
aaaggtgcgcatgcagttaaatgtgttgccaaagacgacattgtgttcctaagattagtc
tctcttgcaaagggccgtaagctggtcaccaggttccttcagcttcttatccctggaagt
gagcttgttcgagtagtgtgcatggcaattttccgtcacttgagactcttgtttggtggt
ctttcttctgatctggaagcagctgagacaactactaatcttgcaaagactgtttctaca
tgtgttaatggtatggatcttcgtgctctcagcgcttgccttgtagcagttgtttgttct
tcagagcagccaccacttaggcccctgggaagccctgctggggatggtgcttctgttatt
ctgaaatcagttcttgaaagggccactcaacttttaagttatccttctggaaattgcagc
atgccaaattatgctttctggagggcgtcatttgatgaatttttcactcttcttaccaag
tattgcgtgaataaatatgagacgatcgggcaatcaatacagaaccagtctccaacaatg
gaagtgattggttcagaggcaatgaggcaagaaatgccttgtgagcttcttcgttctagt
cttcctcacacaaatgaagctcagaggaagcttttaatggacttttcccagcgttctgta
cccatgaacggagccaattcccatgctgggagtaccagccaaataaactctgaatcagtg
aggggttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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