KEGG   Gossypium hirsutum (upland cotton): 107925452
Entry
107925452         CDS       T04793                                 
Name
(RefSeq) ubiquitin domain-containing protein DSK2a
  KO
K04523  ubiquilin
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    107925452
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ghi04131]
    107925452
   03051 Proteasome [BR:ghi03051]
    107925452
Membrane trafficking [BR:ghi04131]
 Autophagy
  Chaperone mediated autophagy (CMA)
   Selective cargos
    107925452
Proteasome [BR:ghi03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    107925452
SSDB
Motif
Pfam: ubiquitin UBA STI1-HOP_DP Rad60-SLD XPC-binding Ubiquitin_2 Dsc3_N TBK1_ULD Rad60-SLD_2 RAWUL ComX RPW8 UN_NPL4
Other DBs
NCBI-GeneID: 107925452
NCBI-ProteinID: XP_016711630
UniProt: A0A1U8LAK0
Position
A01:109145750..109150475
AA seq 551 aa
MGGEGDSSESRLGTSGEDEGVLVNIRCSNGTKFTVRTSLESTVGVFKSLLAQNCDVPADQ
QRLIYKGRVLKDDQTLQSYGLQADHTVHMVRSFAPSSSIPPPAATTNTATPNSTPGVTRG
VGSNEGAGLGASSFPGLNALGGNGGLGLFGSGLPEFEQVQQQLTQNPNMMSELMNTPAIQ
SLMNNPELMRSLIASNPQMREIIDQNPELGHILNDPSILRQTLEAARNPELMREMMRNTD
RAMSNIESSPEGFNMLRRMYENVQEPFMNATTMAGNNGNSPSSNPFAALLGNLGDSQARG
SPNNTSTNGSETTHGQTSPNTNPLPNPWGNTVGGGGTQTNATARSNPAGDARAPGLVGLG
GLGLPDVPPMMNGMPDASQLTQLLQNPALSQMMQSIVSNPQYMNQIMNLNPQLRGMFDLN
PQLREMMQNPEVLHQMFSPETMQQMLGLQQSLLSQLNQQQTTRDSSETGGTTGAPGTAGL
ESLMNMFGGLGAGSLSVPNQPDVPPEELYATQLSQLQEMGFYDTVENIRALRATAGNVHA
AVERLLGNPGQ
NT seq 1656 nt   +upstreamnt  +downstreamnt
atgggtggggaaggcgattcgagtgagtcacgactcggtaccagtggagaagatgaggga
gtgctggttaacatccgctgctcaaatggtacaaaatttacggtgaggaccagcctcgaa
tcaaccgttggagttttcaaatctcttttggctcagaattgcgatgtcccagctgatcag
caacgtttgatttataaaggccgagtcttgaaggacgaccaaacccttcaaagttatggt
ttgcaagctgatcataccgtccacatggttcgtagttttgccccatcttcatctatacct
cctcctgcagctaccacaaatactgcaactcctaattctactccaggggtcacacggggt
gttggttctaatgagggtgctggtctgggagcatcatctttccctggacttaatgcactt
ggtggcaatggaggtttgggtctgtttgggtctggacttcctgaatttgagcaagtacag
caacaactaactcaaaatccaaacatgatgagcgaactaatgaatacacctgctattcaa
agtttgatgaataacccagagttaatgcgtagtttgattgcgagcaatccccaaatgcgt
gagattattgatcaaaacccggagcttgggcatatacttaatgatcctagtattcttcgg
cagacgttagaagctgcaaggaaccctgagctcatgcgtgaaatgatgcggaacactgac
agggctatgagtaatattgaatcctctcccgagggttttaacatgcttaggcgtatgtat
gaaaatgttcaggaaccatttatgaatgctacaactatggctggaaataatggaaatagt
ccgagctcaaacccatttgctgctctattgggcaatctaggtgattctcaagctaggggt
tcacctaacaacacttctacaaatggttctgaaaccactcatggacaaacttccccaaac
acaaatcctcttcctaatccttggggaaacactgttggtggtgggggcacccagaccaat
gctactgcaaggtcaaatcctgctggagatgctagggcaccaggtcttgttggtctggga
ggccttggacttccggatgtaccacccatgatgaatggaatgccagatgcttctcagttg
actcaattgttgcaaaatccagctctatcacagatgatgcagagcatagtgtctaatccc
caatatatgaatcagattatgaatctcaacccgcaactacgcggaatgtttgatttgaat
cctcaattgagagaaatgatgcaaaacccagaagtacttcatcagatgttttcacccgag
acaatgcagcaaatgctaggtttacagcaatcacttctatcccagctcaatcaacaacaa
actacccgggattcatcagagactggtggtactacaggagctccaggtactgctggtctg
gagtcgttaatgaatatgtttggtggtctaggtgctggtagcctgagtgttcccaaccaa
cctgatgttcccccagaagaactctacgctacacaattatcacaattacaagaaatgggt
ttttacgatacggtagagaatatcagagcactacgtgctactgctggaaatgtccatgcg
gcggttgagagacttctaggtaacccggggcagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (13)   
   Pfam (13)   
All databases (29)   

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