KEGG   Gossypium hirsutum (upland cotton): 107936888
Entry
107936888         CDS       T04793                                 
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107936888
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107936888
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     107936888
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     107936888
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 107936888
NCBI-ProteinID: XP_016725158
UniProt: A0A1U8MHS4
Position
D13:57025542..57027991
AA seq 195 aa
MEEADEMVTPGEVLGRATDLKAGKGAYAASHNNTIYASLTGFRRIQAPPPASHDKRPTVE
VTGHKAHGPVPEPGSVVIARVTKVMARTVSADIMCVGPKSVREKFTGIIRQQDVRATEID
KVDMHLSFRPGDIVRAVVLSLGDARAYYLSTAKNELGVVSAESSAGATMVPISWTEMQCP
LTGQIELRKVAKVVN
NT seq 588 nt   +upstreamnt  +downstreamnt
atggaagaagcagatgagatggtaacgccaggagaggtattaggaagagccactgatctg
aaagcagggaaaggagcgtacgccgcctctcacaacaacaccatctacgcttcccttacc
ggcttccgccgcatccaggcccctcctcccgcttcccatgacaagagaccaactgtggag
gtaactggtcacaaagcccatggtcctgttccagaacccggttcggttgtcattgcccga
gttactaaggtgatggctaggacagtatcagctgatataatgtgtgttggtccgaaatct
gtgagagaaaaattcactggtataattaggcaacaggatgttagagctactgaaattgac
aaagtggatatgcatttgtcatttcgtcctggcgatattgtcagagcagtagtgctgtct
cttggagatgcacgggcttattacctatccacggctaagaacgaattaggcgtcgtgtct
gctgaaagctcagctggtgcaacaatggttccgataagttggactgagatgcagtgccca
ttgactggccaaatcgagctaaggaaggtggcgaaggtcgttaactaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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