KEGG   Geobacillus genomosp. 3: M493_00835
Entry
M493_00835        CDS       T02798                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
gjf  Geobacillus genomosp. 3
Pathway
gjf03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gjf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    M493_00835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gjf03021]
    M493_00835
   03400 DNA repair and recombination proteins [BR:gjf03400]
    M493_00835
Enzymes [BR:gjf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     M493_00835
Transcription machinery [BR:gjf03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     M493_00835
DNA repair and recombination proteins [BR:gjf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      M493_00835
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AGT30558
UniProt: S5ZJS3
Position
115260..118832
AA seq 1190 aa
MTGRLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFKEISPIEDFSG
NLSLEFIDYSLGEPKYSVEEAKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYYSDKIDKNGKRGYSATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFSSDQEIVDLLGDNEYLRNTLEKDNTDSTEKALIEIYERL
RPGEPPTLENAKSLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFNQRLAETIVDPETG
EVIAEAGAIIDRRMLNRLLPYLEKGVGLQMHRPAEGVADGPIEVQTVKIYAPNDPDNEKV
INIIGNGFIAEDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKF
GFIETPYRRVDPETGKVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVIARFRGEN
IVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGT
GMEYVSAKDSGAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFIRSNQ
GTCYNQRPIVKKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSER
LVKEDVYTSVHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGD
LLVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGDE
LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPFLPDGTPVDIMLNPL
GVPSRMNIGQVFELHLGMAARKLGLHIASPVFDGATEEDVWNILEEAGMARDAKTVLYDG
RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQSLGM
DVTILTGDEQEINMENFDDDDDHAPDAIMVDVKPIEPEEVDEEKDAVTKE
NT seq 3573 nt   +upstreamnt  +downstreamnt
ttgacaggccgactagttcaatacgggcgacaccgccaacgaagaagttatgcacgcatt
agcgaagtgctggaattgccgaacttgattgaaatccaaacgtcttcgtaccaatggttt
ctcgatgaaggactgcgggaaatgttcaaggaaatttctccgatcgaggacttttccggc
aatctctctcttgaatttatcgactatagcttaggagagccaaaatattcggttgaagag
gcaaaagaacgcgacgttacatatgcggcgccgcttcgcgtgaaagttcgcctcatcaat
aaagagacgggcgaagtgaaagaacaagacgtgttcatgggtgattttccactgatgacg
gaaacgggcacgtttatcatcaacggggcggagcgtgtgatcgtctcccagctcgtccgc
tcgccaagcgtctattacagtgataaaatcgataaaaacgggaaacgcggctattcggca
acagtgattccgaaccgcggcgcatggctcgaatatgaaaccgatgcgaaagacgtcgtt
tacgttcgtatcgaccgcacccgtaaattgcctgttacggtgcttcttcgtgcgcttggg
ttcagctccgaccaagaaatcgtcgacttgcttggtgataacgaatatttgcgaaatacg
cttgaaaaagataataccgacagcacggaaaaagcgttgatcgaaatttatgagcgtctc
cgcccgggtgagccgccaaccctagagaacgcaaaaagtttgcttgcgtcccgctttttt
gacccgaaacgatacgatctggccagtgtaggacgctataaaatcaacaaaaaacttcat
attaaaaaccgcttgtttaaccagcggctggcagaaacgatcgtcgatccggaaacggga
gaagtcatcgctgaggctggggccatcatcgaccgccggatgctgaaccgcctgttgccg
tatttggaaaaaggagtcggactgcagatgcaccgcccggctgaaggagtggcggacggt
ccgattgaggtgcagacggtgaaaatttacgcgccgaatgacccagacaatgaaaaggtg
atcaacatcatcggcaacggttttatcgccgaagatgtcaaacatattacgccggcggac
atcattgcctcgatcagttatttcttcaacttgcttcacggtgtcggcgatacggacgac
atcgaccatttaggcaaccgccgtctccgttcagtcggcgaactgttgcaaaaccaattc
cgcatcggcttgtcgcggatggagcgcgtcgtgcgtgagcgcatgtcgatccaagatacg
aacacgattacaccgcagcagctcatcaacattcgcccggtgatcgcggcgattaaggaa
ttttttggcagctcgcagctgtcgcagtttatggatcagacgaacccgttggctgagttg
acgcataaacgccgcctttctgcgcttggccctggcggattgacgcgcgagcgcgccgga
tttgaagtgcgcgatgtccactattcgcattatgggcggatgtgtccgatcgagacgccg
gaaggcccgaacatcgggttgatcaactcattgtccacgtatgcgaaggtgaacaaattc
ggttttattgaaacgccgtaccggcgcgttgatccggagacgggaaaagtaacggaccaa
atcgactatttgacggccgatgaagaagacaattacgttgtggcgcaagcgaacgtgccg
cttgcggaagacgggacgttccttgaagaaaatgtcatcgcccgtttccgcggtgaaaac
atcgttgtgaagcgcgaccgcgtcgactacatggacgtgtcgccgaagcaagttgtttcc
gcggcgacggcatgcatcccgtttttggagaatgacgactccaaccgcgctttgatgggc
gcgaacatgcagcgtcaagcagtgccgctgttagaaccggaagcgccgatcgtcggtaca
ggaatggagtatgtttcagcgaaagattcgggtgcggcggttatttgcaagcaccgcggc
attgtcgaacgtgttgaggcaaaggaaatttgggtacggcgactcattgaggtcgacggc
aaagaagtcaagggtgatctagataaatatcggttgctgaagtttattcgttccaaccaa
ggcacttgctacaaccaacggccgatcgtgaaaaaaggcgatatcgtcgaaaagggtgaa
attttggctgacggcccgtcgatggataaaggtgaactggcgcttggtcgcaatgtgctc
gttgcctttatgacgtgggacggctacaactacgaagatgccatcatcatgagtgagcgc
cttgttaaagaagacgtgtacacatcggtccacattgaggaatacgaggcggaatcgcgc
gacacgaaactcggtccggaagaaattacgcgcgacatcccgaacgtcggtgaagatgcg
ttgaaaaacttggatgagcgcggcatcgtccgcatcggcgccgaagtaaaggacggcgac
ttgctcgtcggcaaagtgacgccaaaagggatgaccgaattgacggccgaggagcggttg
ctccatgccatctttggtgaaaaagcgcgtgaggtgcgcgatacgtcgctgcgcgtcccg
cacggcggcggcggtattgttcttgacgtgaaagtatttaaccgcgaagatggcgacgaa
ctcccgccaggcgtcaaccaacttgtccgcgtctacatcgtgcagaagcggaaaatttcc
gaaggtgacaaaatggcgggtcgccacgggaacaaaggggttatttcccgtattcttcca
gaagaagatatgccgttcttgcccgatggcacgccggttgacatcatgttaaacccgctc
ggcgttccatcgcggatgaacatcgggcaagtgtttgagctgcatcttggcatggcggcg
agaaaacttggcttgcatatcgcttctccggtctttgacggagcgacggaggaagatgtt
tggaacattcttgaagaagccggcatggcgcgtgatgccaaaaccgtgctatatgacggg
cggacgggtgaaccatttgacaaccgcgtgtcggtcggtattatgtatatgattaagctc
gcccacatggttgatgacaagcttcatgcccgttcaacaggtccgtactcactcgtcacc
cagcagccgctcggcggcaaggcacagtttggcggccagcgtttcggcgagatggaggta
tgggcgcttgaagcgtacggtgcggcatacacattgcaagaaattttgactgttaaatcc
gacgacgttgtcggccgcgtcaaaacatacgaagcgatcgtcaaaggggaaaacattccg
gagccgggcgtgccggagtcgtttaaagtgttgattaaggagctgcaaagtttagggatg
gacgtcacgattttgacaggtgatgagcaagaaatcaacatggaaaactttgacgacgac
gatgaccatgcgccggatgcgattatggtcgacgttaagccgatcgagccggaagaggtt
gacgaagaaaaagacgcggtgacgaaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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