KEGG   Geobacillus kaustophilus: GK3044
Entry
GK3044            CDS       T00217                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
gka  Geobacillus kaustophilus
Pathway
gka03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gka00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GK3044
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gka03019]
    GK3044
   03016 Transfer RNA biogenesis [BR:gka03016]
    GK3044
Enzymes [BR:gka01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     GK3044
Messenger RNA biogenesis [BR:gka03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GK3044
Transfer RNA biogenesis [BR:gka03016]
 Prokaryotic type
  tRNA degradation factors
   GK3044
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 DNA_ligase_A_M
Other DBs
NCBI-ProteinID: BAD77329
UniProt: Q5KVF7
Position
complement(3064744..3067020)
AA seq 758 aa
MDHVLAERILTFMRDEAYKPLTVEELEEAFGIADAEEFKTFVKTLVAMEEEGLVVRTRSN
RYGVPERMNLVRGKVIGHPKGFAFVTPEEPGLDDIFIPPSELKNAMHGDTVLVRVQADSS
GARREGTIVRILERGVKEVVGTYTESKYFGFVIPDDKRIVNDIFIPKNAANGAVEGHKVV
ARLTSYPEGRMSAEGEVVQILGHKNDPGVDILAIIYKYGLPLQFPEDVIEQANRVPDVIT
EKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPID
REAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPQGEVVRHEIFPS
VIRTAERMTYSDVNKILVDKDEILREKYAPLVPMFELMAELADILRAKRMKRGAIDFDFK
EAKVLVDENGKPYDVVLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVHEDPKPE
KLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVISTVMLRSMKQARYDAE
SLGHYGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGQMDLDTQQKWAEKLPEIAEHAS
DMERRAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTIEGLVHVSYLT
DDYYRYDERHYALIGERTGKMYRIGDEITVRVINVNKDERIVDFEVVGMKGRRPPKAKAA
PVVIEGKKQKKGKAKAEPKAQSGSNRSAKAKKKKKKKR
NT seq 2277 nt   +upstreamnt  +downstreamnt
atggatcatgtgttggccgaacgcattttaacgtttatgcgcgatgaggcgtacaaaccg
ctgaccgttgaggaactggaggaagcgtttgggattgcggatgctgaggagtttaaaacg
tttgtcaaaacgcttgtcgccatggaagaggaaggtcttgtcgtccggacgcgcagcaac
cgctacggcgtgcccgagcggatgaatctcgtgcgcggcaaggtgattggccacccgaaa
ggattcgcgtttgtcacaccggaggagccgggactggatgatattttcatcccgccgtcc
gaactgaaaaacgccatgcatggcgacacggtgcttgtgcgcgtccaagccgattcatcc
ggggcgcgccgcgaaggaacgatcgtccgcattttggaacgcggggtgaaagaggtcgtc
ggcacgtacacggaaagcaaatatttcggctttgtcatcccggatgacaaacggatcgtc
aatgacattttcatcccgaaaaacgcggcgaacggcgcggtcgaagggcataaagtcgtc
gcccggctcacctcgtacccggaaggacgaatgagcgctgaaggggaagtcgtccaaatt
ctcggccataaaaacgacccgggcgtcgacattttggcgatcatctataaatacggcctt
ccgcttcaatttccagaagacgtgatcgagcaagccaaccgggtgccggatgtcattacg
gagaaagacttggaagggcgccgcgatttgcgcggcgagatgatcgtcacgatcgacggg
gaagatgcgaaggatttggacgatgccgtcaccgtgacaaagcttgaaaacggcaactat
aagctcggcgttcatatcgccgatgtcagctactatgttgaggaaggctcgcctattgac
cgcgaggcgtatgaacgcggcacgagcgtttatttggttgaccgcgtcatcccgatgatc
ccgcatcggctgtcgaacggcatttgctcgctcaacccgaaagtcgatcggctgacgctc
tcgtgcgaaatggaaatcaccccgcaaggagaagtcgtccgccatgaaattttcccaagc
gtcatccgcacggcggaacggatgacgtattccgatgtcaataaaattctcgttgacaaa
gacgaaatcttgcgggaaaaatatgcgccgcttgtgccgatgtttgagctgatggctgag
cttgccgacattttgcgggcgaagcggatgaagcgcggggcgattgattttgattttaag
gaggcgaaggtgcttgtcgatgaaaacggcaagccgtacgatgtcgtcttgcgcgagcgg
tcggtcgctgagcggttgattgaagagtttatgctggcggcgaacgaaacggtggctgag
catttccattggttgaacgtgccatttatttaccgtgttcacgaggatccgaagccggaa
aaactgcagcgctttttagagttcatcacgaacttcggctatgtcgtgaaaggaacgggc
aaccaaatccatccgcgcgctttgcaacaaattctcgaagcggtgcgcggcgagccggaa
gaaatggtgatctcgaccgtcatgcttcggtcgatgaagcaggcgcgctatgacgccgag
agcctcggccattacggcctgtcgactgagttttacacccattttacgtcgccgatccgc
cgctacccggatttgatcgtccatcggttgatccggacgtatctcatcaacggccagatg
gatcttgacacccagcaaaaatgggcggaaaagttgcctgaaattgccgaacacgcttcc
gatatggagcggcgcgccgttgaggcggagcgggagacggacgatctgaagaaaaccgag
tttatggaagacaaaatcgggatggagtttgacggcattatcagctcggtgacgaacttc
ggcttgttcgttgagctgccgaacacgatcgaaggcttggtgcacgtcagctacttaacg
gacgactattaccgctatgacgaacgccactacgcattgatcggcgaacggaccgggaaa
atgtaccgcatcggcgatgaaatcaccgtccgcgtcatcaacgtcaacaaagacgaacgg
atcgtcgattttgaagtcgtcggcatgaagggacgccgtccgccgaaagcgaaagccgct
ccggtcgtcattgaagggaaaaagcaaaagaaaggaaaagcgaaggcggagccgaaagcg
caaagcggctcaaaccgcagcgcgaaggcgaaaaagaagaaaaagaaaaaacggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (42)   

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