KEGG   Glarea lozoyensis: GLAREA_08764
Entry
GLAREA_08764      CDS       T04883                                 
Name
(RefSeq) Sm-like ribonucleoprotein
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
glz  Glarea lozoyensis
Pathway
glz03018  RNA degradation
glz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:glz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GLAREA_08764
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GLAREA_08764
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:glz03019]
    GLAREA_08764
   03041 Spliceosome [BR:glz03041]
    GLAREA_08764
Messenger RNA biogenesis [BR:glz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GLAREA_08764
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GLAREA_08764
Spliceosome [BR:glz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GLAREA_08764
 Complex C
  U2 snRNP components
    GLAREA_08764
SSDB
Motif
Pfam: LSM Hfq SM-ATX AEP1
Other DBs
NCBI-GeneID: 19467812
NCBI-ProteinID: XP_008075916
UniProt: S3DXC4
Position
Unknown
AA seq 160 aa
MSEAIVPIATERKGTRENVKAGQNCDIGATVVDNRVQRGVERGDVVVEDGSPRGTEHKLP
RRVEPNYFFKTLVDHEVTVELKNDIQIRGTLKSVDQYLNIKLDDIQVVEELKYPHLSSVK
NVFIRGSVVRYVHLPGAAVDTALLEDATRREAAQQASKVK
NT seq 483 nt   +upstreamnt  +downstreamnt
atgtcagaagcgattgtgccgatcgccacagagcgtaaagggacacgagaaaacgtgaag
gcgggtcaaaactgtgacataggtgctacagtagttgacaacagggtccagagaggagtc
gaaagaggcgatgttgtcgttgaagatggatctcctcggggaactgaacacaagctgccg
cgacgagtggaacccaactactttttcaagaccctagtggatcatgaagtcaccgtcgaa
ctgaagaacgatatccaaatccgcggcacactcaaatccgtcgatcaatacctgaatata
aagctggatgatattcaagtggtagaggaactcaagtatccacatctgtcttcggtgaag
aatgttttcatcagaggaagtgtggtcagatatgtacatctgccaggggccgctgtggac
acagctcttttagaagatgccacacggcgagaagcagcgcaacaagcatccaaagtgaag
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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