KEGG   Glaciecola nitratireducens: GNIT_2055
Entry
GNIT_2055         CDS       T01632                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
gni  Glaciecola nitratireducens
Pathway
gni03030  DNA replication
gni03410  Base excision repair
gni03420  Nucleotide excision repair
gni03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gni00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GNIT_2055
   03410 Base excision repair
    GNIT_2055
   03420 Nucleotide excision repair
    GNIT_2055
   03430 Mismatch repair
    GNIT_2055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gni03032]
    GNIT_2055
   03400 DNA repair and recombination proteins [BR:gni03400]
    GNIT_2055
Enzymes [BR:gni01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     GNIT_2055
DNA replication proteins [BR:gni03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     GNIT_2055
DNA repair and recombination proteins [BR:gni03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     GNIT_2055
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     GNIT_2055
   MMR (mismatch excision repair)
    DNA ligase
     GNIT_2055
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      GNIT_2055
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH DZR_2
Other DBs
NCBI-ProteinID: AEP30164
UniProt: G4QLQ8
Position
complement(2277958..2279985)
AA seq 675 aa
MTELNKVKAHIDALKSQLEEHNYQYYVMDAPSIPDAEYDRLMRELITLEKQNPALISADS
PSQKVGGTPLSKFDTVVHEVPMLSLDNGFEASDLTAFEKRLQDRLLSFSDIQFSCEPKLD
GLAASILYENGILTRAATRGDGQVGEDITKNVKTIANVPIKLRGENIPSKVEVRGEVFMP
KAGFEKLNETQKKAGNKLFANPRNAAAGSLRQLDSRITAKRPLLFYAYSMGVIEGESLTD
LPLHTERLAALGKWGIPLCKESAIANGAEECIAYFTKIGQMRNSLPYDIDGVVFKVNDIN
LQQRLGFVSKAPRWAIAQKFPAQEELTTLLDVEFQVGRTGAITPVARLEPVFVGGVTVSN
ATLHNQDEIARLGVKIGDKVVIRRAGDVIPQVVSVVLEKRTDDVRDIVFPTHCPVCHSHI
ERTESEAVARCTGGLVCAAQRKESIKHFASRKALDIDGLGDKIVEQLVDANMIKNPADLF
RLNMPKLLSVERMGDKSAVNLLNAIEKSKQTTLPKFLYSLGIREVGESTARNLALHYLTL
ERIMQADIESLVEVQDVGAIVAQHVFHFMREPHNVDIINDLFELGIHWPEIQPASLDEQP
FAGKTIVLTGTLSQMGRSEAKAKLQELGAKVSGSVSAKTDLLIAGEKAGSKLSKAESLNI
EVWNEAQMVAFFEQL
NT seq 2028 nt   +upstreamnt  +downstreamnt
atgactgaactaaataaagtgaaagcgcacattgatgcgcttaaatcgcagctagaagaa
cacaattaccaatactacgttatggatgcacccagcattcctgatgcagaatatgatcga
ttaatgcgggagcttattactcttgaaaagcaaaatccagccttaatcagtgccgattct
ccgagtcaaaaagtaggcggcacgccattatctaaatttgatacagttgtgcatgaagtc
ccgatgctgtcgcttgacaacggctttgaagcgtctgatttgactgcatttgaaaaacga
ctgcaagacagattactttcattttctgacattcagttcagctgtgaacccaaacttgat
ggcttagctgcctctattctttatgaaaacggcatactcaccagagctgcaacaaggggt
gacgggcaagttggtgaagatattacaaagaatgtcaaaaccattgccaacgtgcccatt
aagctgcgcggggaaaatataccgagtaaagtcgaagtccgaggcgaagtgtttatgccg
aaagcgggttttgagaagctcaatgagacacaaaagaaagccggaaataaactattcgct
aatccaagaaatgcggcggcaggcagcttgcgtcaacttgattcgcgaattacggcgaaa
cgaccgctactgttttatgcctatagtatgggcgttattgagggggagagtcttaccgac
ctgccgttgcataccgaacgactagccgcactcggtaagtggggcatccctttatgtaaa
gagtctgcgattgctaatggcgccgaagagtgtattgcctattttacgaaaataggtcag
atgcgcaattcgctaccatatgacattgatggtgttgtgtttaaagtcaacgatattaac
ttacagcagcgtctgggcttcgtttcaaaggcgccgcgctgggccattgcacaaaagttt
ccagcgcaagaggaattaaccaccttactcgacgttgagtttcaagttggccgcacaggc
gcgattacccctgtggctaggttagaaccagtttttgtcggtggagttaccgtatctaat
gcgacgctgcacaatcaagatgaaattgctcgtttgggcgttaaaatcggtgacaaagtg
gttattcgacgtgcgggagatgtgatcccgcaggttgtgtctgttgttttagaaaaacgc
acagatgatgttcgtgatatcgttttccccacgcattgccctgtttgtcattcgcacatc
gagagaacggaatcagaggccgttgctagatgtactggcggtctggtctgcgcggcacaa
cgaaaggaatctattaagcattttgcttcgcgtaaagctctcgacattgatggtttagga
gacaaaatcgttgagcagctagtagacgcaaacatgattaaaaatcctgccgatttgttt
agattaaatatgcctaagttgctctcagtagagaggatgggggataagtccgctgttaac
ctcctcaacgcaatcgaaaagtcaaaacaaacaaccttgcctaagtttctctattctctg
ggaataagagaagtgggtgagtcaaccgcacgcaatttagcactacactatttgactcta
gaacggattatgcaagcagatatagaatcattggtagaagtgcaagatgttggtgccatt
gtagcgcagcatgttttccactttatgcgagagcctcacaacgtagatataatcaatgat
ttgtttgagctaggaattcattggcccgaaatacagccagcgtcactagatgaacagccg
tttgctggaaaaacgattgtgctaaccggaacgttatcgcaaatgggccgaagcgaggct
aaggcgaagctacaggaactgggcgcaaaagtgtcgggcagtgtatcggctaaaacggat
ctgctaattgctggcgaaaaagcgggttcaaagttgagtaaggctgaatcgttgaatata
gaggtttggaatgaagctcagatggtggcttttttcgagcaactttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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