KEGG   Gamma proteobacterium HdN1: HDN1F_12850
Entry
HDN1F_12850       CDS       T01300                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
gpb  Gamma proteobacterium HdN1
Brite
KEGG Orthology (KO) [BR:gpb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gpb03032]
    HDN1F_12850 (topA)
   03400 DNA repair and recombination proteins [BR:gpb03400]
    HDN1F_12850 (topA)
Enzymes [BR:gpb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     HDN1F_12850 (topA)
DNA replication proteins [BR:gpb03032]
 Prokaryotic type
  DNA Topoisomerases
   HDN1F_12850 (topA)
DNA repair and recombination proteins [BR:gpb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      HDN1F_12850 (topA)
SSDB
Motif
Pfam: Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_4 DUF2399
Other DBs
NCBI-ProteinID: CBL44868
UniProt: E1VJ76
Position
1593887..1596541
AA seq 884 aa
MQKSLVIVESPAKAKTINKYLGKNFIVKSSVGHVRDLPTSGRGETATDSKQRSQKAAATR
QLSAAEKEKQKKARAWEALVARMGVDPEHGWKATYQVLPDKQKVVDELRKLAKDCDSIYL
ATDLDREGEAIAWHLREVIGGDDSRFQRVVFNEITQSAIQEAFASPGRVNENRVNAQQAR
RFLDRVVGYMVSPLLWAKIGRGLSAGRVQSVAVRLLVEREREIRAFLPEEYWELFAETLT
AKKTPLRLEVAREGDKAFRPTDEAQAMAAVKALQHAEYRVANREDKPTRSKASAPFITST
LQQAASTRLGFSVKRTMMLAQRLYEAGYITYMRTDSTNLSAEAVGACREYIEGRYGARYL
PDAPNTYASKEGAQEAHEAIRPTDVHLMADQVSGLEKEAQKLYELIWKRFVACQMPPAEY
LSTQMTVKAGEFELRAKGRILKFDGHLAVGMPGTRTSDEDIELPDVAVGEVLALKKLDPL
RRFTKPPQRFTEASLVRELEKRGIGRPSTYASIISTIQERGYVRVESRRFYAEKMGDIVT
DRLSESFDNLMDYGFTARMEEKLDEIAQGNLYWQNVLDEFYSRFSGQLAHAELTEGGMRS
NTPVETDIPCPQCGRPMMIRTGATGVFLGCSGYNLPPKERCKGTLNLVPGEEGISATPES
DEDESGELEALALRKKHRCKLCATAMDSYLVDEHRKLHVCGNNPDCPGYEVEQGQFKLKG
YEGPIVECDKCGSDMQLKTGRFGKYFGCTNEECGNTRKLLRNGEVAPPRESPIPMQHLRC
QKHDDFYLLRDGASGLFLAASQFPRHRETRAPTIAELKTVAEQIPEKYQYLLSAPVKDDK
GNPAIVRFSRKSREQYVMSESEGKATGWSAVWADGKWVQKPAKE
NT seq 2655 nt   +upstreamnt  +downstreamnt
atgcaaaaatcactggtcatcgtcgagtctccggccaaagccaagaccatcaacaaatac
ttgggcaaaaactttatcgtaaagtccagcgtcgggcatgtgcgcgatctacccacaagc
gggcgtggcgaaacggcgacggatagcaaacagcgcagccaaaaggccgctgccacacgc
caattgagcgctgctgaaaaagagaagcagaaaaaggcgcgcgcgtgggaagcgttggtg
gcacgcatgggagtcgatccagaacacggctggaaggcgacttatcaagtcctgccggat
aagcaaaaggttgtggatgaactgcgtaagctcgccaaagactgcgattctatctatctc
gcgaccgaccttgatcgtgagggggaggcaattgcttggcacttgcgcgaggtgattggc
ggtgatgacagccgttttcagcgcgttgtcttcaacgaaattacccagagcgctattcaa
gaagcgtttgcatcgcccggtcgcgtcaatgaaaaccgcgtgaatgcccagcaagcgcgg
cgtttcttggatcgtgtcgtcggctacatggtgtcgccgttactatgggccaagatcggc
cgtggcttatcggcagggcgggtgcagtcggtggcggtgcgcctactggtcgagcgagaa
cgtgaaattcgagcgtttttgccagaggagtattgggagttatttgcagaaactcttacc
gccaaaaagacgccgctgaggcttgaagttgcccgcgaaggcgacaaagcatttcgcccc
accgacgaggcacaggcgatggcggcagtgaaggctttgcagcacgctgaataccgcgtt
gccaaccgcgaagataagcctacccgcagcaaagcatccgcgccgtttatcacctccaca
ctgcaacaagccgcaagcacgcgcttggggtttagcgtgaaacgcaccatgatgctggcc
cagcgcctctacgaagcgggctacatcacctacatgcgtaccgattccaccaatttgagc
gctgaggcggtaggcgcgtgccgagaatatatcgaggggcgttacggcgcacgttatttg
ccggatgcgcccaatacctatgcaagtaaagagggcgcacaagaagctcacgaagcgatc
cggcccacggatgtacacctgatggcggatcaagtcagtggcttggaaaaagaagcccag
aaactttacgaattgatctggaagcggtttgttgcctgccagatgccgccggcagaatac
ctaagcacccagatgaccgtgaaggctggcgagtttgagctgcgtgccaaaggtcgcatc
ctcaagtttgatggccacttggcggtgggaatgcccggaacgcgcaccagcgatgaagat
atcgagctcccagatgttgccgtgggtgaggtgcttgcgctcaagaaacttgacccctta
cgccgcttcacgaagccaccccagcgctttaccgaagcctcgctggtgcgcgagttggaa
aaacgtggaattggccgaccctctacctatgcatccattatttctacgattcaggaacgt
ggctacgtgcgagtggagagccggcgcttttacgcagaaaagatgggagacatcgtaacg
gatcgcctgagcgagagctttgataacctgatggattatggctttacggcgcgcatggaa
gagaaactcgacgaaatcgcgcaaggcaatctttactggcaaaacgtacttgacgaattc
tactcgcgcttctccggccagcttgcacatgcagaactaacggaaggcggcatgcgcagc
aatacgccagtcgaaaccgatattccctgcccgcagtgtggccggcctatgatgatacgc
acgggcgcaacaggggtgtttcttggttgctctggctacaacctgccgcccaaagaacgc
tgcaaaggcacgctgaaccttgttcccggtgaagaaggcattagcgctactccagagtct
gatgaagacgaaagcggagaactggaggcgttagcgcttcgcaagaaacaccgctgcaag
ctctgcgctactgcgatggacagctatttggtggatgagcaccgtaagttgcacgtttgc
ggcaataatccggattgtcccggctatgaagtggagcaagggcagttcaagctaaaaggg
tatgaaggccccattgtcgagtgtgacaagtgtggttctgacatgcagttaaaaactggg
cgctttggcaaatactttggctgcaccaacgaggagtgtggtaacacccgcaagctgctt
cgtaacggagaagttgcgccgcctagagagtcgccgatcccgatgcagcacctacgctgc
cagaaacacgatgatttttatctgctgcgcgatggcgcatcggggctgtttttggcggcc
agtcagtttccgcggcaccgtgaaacgcgcgcgccgacgattgcggagctgaaaacagtg
gcggagcagattcccgagaagtaccagtacctcctgtccgccccagtaaaggatgacaaa
ggcaacccagcgattgtacgcttcagccgtaaatctcgtgagcagtatgtgatgagtgaa
agtgaaggcaaggccaccggctggtcggcggtctgggcagacggtaagtgggtacagaag
cccgccaaagagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system