KEGG   Gemmatimonas phototrophica: GEMMAAP_05005
Entry
GEMMAAP_05005     CDS       T04580                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
gph  Gemmatimonas phototrophica
Pathway
gph03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gph00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GEMMAAP_05005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gph03021]
    GEMMAAP_05005
   03400 DNA repair and recombination proteins [BR:gph03400]
    GEMMAAP_05005
Enzymes [BR:gph01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GEMMAAP_05005
Transcription machinery [BR:gph03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     GEMMAAP_05005
DNA repair and recombination proteins [BR:gph03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      GEMMAAP_05005
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 RPOC_hybrid
Other DBs
NCBI-ProteinID: AMW04375
UniProt: A0A143BIE1
Position
1226718..1231034
AA seq 1438 aa
MIDFRSSREARASAFDYMSVRIASPEEIRGPKDPKERERLEMAGLRTWWSWGEVTKPETI
NYRSFKPEKDGLFCERIFGPVKDWECHCGKYKRIRYRGVICDRCGVEVTLSKVRRERMGH
IELAVPVAHIWFFKTLPSPMGNLLDVTLRDLEKVIYYSNYIVIEPGSQEVRERQLLDEDE
YLTLRQKAKAEGDTAFQCDIGAPAVRELLKRLDVDKTAEELRGSVVGETSQHRKKQMLKR
LKIVDAFRTSGEGGEIRNRPEWMILDVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIN
RNNRLQKLISHRAPEVILRNEKRMLQEAVDALFDNGRRSKAIRGRGKRPLKSLSDMLKGK
QGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKAMALELFKPFIIHKLVESGEAETV
KRAKKIVERENAMVYEVLEGIIKDHPVLLNRAPTLHRLGIQAFEPVLVEGKAIRIHPLVT
TAFNADFDGDQMAVHVPLSFEAQIEARVLMLSSNNILKPSDGRPVAEPSQDIVLGCYVAT
KAPYADFDKKTSDPAFVKTLPPYVNFSEVEIAIATGRATLQTPIRWMLETESGKEWIATT
AGRVMFSGIVPTVLPFLNKDMKKKALGELVFQSYRTAGLAETVAMLDRLKEFGFRNATKG
GVSIGIEDLHIPKEKQVLLTEASERVERFQRAYATGNITNGERYNKVIDTWTHANTDIAD
AMVKTMRESQGGFNPVFMMFDSGSRGSRDQIRQLAGMRGLMAKPQKKLTGGIGEIIENPI
KSNFREGLSVLEYFSSTHGARKGLADTALKTADAGYLTRRLVDVAQDMTIAEEDCGTILG
IDTAALKEGEDVIEPLAERLVGNVAAEEVFDPMERDEAGRPRLLVEAGSLISEETAQAIE
DAGIETVKIRSVLTCEAKRGLCRMCYGRNLATMQMVDLGEAVGIIAAQSIGEPGTQLTLR
TFHVGGTAARIAEQTARKTKKAGVIEFGDRLVTVINPDGQKVVTSYEGELIIKASADKNA
LIEARLQVPLGAYLMVEDGQSVKKDDTVFTWDPYSNPIIADVEGTIRFVDLVEDESLSEE
LDELTGLRQRVVIEDREKKLHPHIEIWQNKGGKEKRVRDFILPVGAVITIEDGHEIKAGT
IMAKISREAYKTRDITGGLPRVAELFEARRPKDPATISEIDGFVRFGEIKRGKREVFVRP
AMVDKGVWQVDESQAEQVYEVPSGKHLRVHEGDRVRAGDRISEGPVNPHDILRIKGPRAV
QEYLLNEVQEVYRLQGVKINDKHIGVIVKQMLQKVRIVESGDTEMLEGEHVDRAVFRETN
EEAKKRKITPATAEPLLLGITKASLTTQSFVSAASFQETTRVLTDAAIRGSRDDLLGLKE
NIIIGHLIPAGTGMYRYQEVDVESDALPEPEPLPEALEPNFEALLPSFEPSAFTMPDE
NT seq 4317 nt   +upstreamnt  +downstreamnt
atgatcgatttccgcagctcgcgcgaagcccgcgcgtcggcgttcgactacatgtcggtc
cgcatcgcctcacccgaggagattcgcggcccgaaggaccccaaggagcgcgaacggctg
gaaatggccggtctgcgcacctggtggtcatggggcgaagtcacgaagcccgaaaccatc
aactaccgttcgttcaagccggaaaaggacggtctgttctgcgagcgcatcttcggtccc
gtcaaggactgggaatgccattgcggcaagtacaagcgcatccgctatcgcggcgtgatt
tgtgaccggtgcggcgtggaagtcacgctcagcaaggtccgtcgcgagcgcatgggtcac
atcgaactggcagtgccggttgcgcacatctggttcttcaagaccctgccgtcgcccatg
ggtaacctcctcgacgtcaccctgcgtgatctcgagaaggtcatctattacagcaactac
atcgtcatcgagccgggctcgcaggaggtgcgtgagcgccagctgctcgacgaagacgag
tacctgacgctgcgccagaaggcgaaggccgaaggggataccgcgttccagtgcgacatc
ggcgcaccggccgtgcgtgagctgctcaagcgtctcgacgttgacaagacggccgaggag
ctgcgcggctccgtcgtgggcgaaacgtcgcagcatcgcaagaagcagatgctgaagcgt
ctcaagattgtcgatgcgttccgcacgtcgggcgagggtggcgagatccgcaaccgtccg
gagtggatgatcctcgacgtcattccggtcattccgccggacctgcgtccgctcgtgccc
ctcgatggcggccgcttcgcgacgtccgacctgaacgacctgtaccgccgcgtcatcaac
cgcaacaaccgtctccagaagctcatctcgcaccgggcgccggaagtcatcctgcgcaac
gagaagcgcatgctgcaggaagcggtggacgcgttgttcgacaacggccgtcgctccaag
gccattcgtggccgcggcaagcgtccgctcaagtcgctgtccgacatgctcaagggcaag
cagggccggttccgtcagaacctgctcggcaagcgcgtggactactcgggccgttcggtc
atcgtggtgggtcccgagctcaagctgcaccagtgcggtttgcccaaggccatggcgctc
gaactcttcaagccgttcatcatccacaagctggtggagagcggcgaagcggagacggtg
aagcgcgccaagaagatcgtggagcgcgagaacgcgatggtctacgaggtgctggaaggc
atcatcaaggaccacccggtgctgctcaaccgcgcgcccacgctccaccgtctgggcatc
caggcgttcgagccggtgctcgtggaaggcaaggccattcgtattcacccgctcgtgacg
acggcgttcaacgccgacttcgacggtgaccagatggccgtgcacgtgccgctgtcgttc
gaagcgcagatcgaagcgcgcgtgctcatgctgtcgtccaacaacatcctcaagccgtcg
gacggtcgtccggtggcggagccgtcgcaggacatcgtgctcgggtgctacgtcgccacc
aaggcgccgtacgccgacttcgacaagaagacgtccgatccggcgttcgtgaagacgttg
ccgccgtacgtcaacttctccgaagtcgaaatcgccatcgcgaccggccgcgccacgctg
cagacgccgatccgctggatgctggagacggagtcgggcaaggaatggatcgccaccacc
gccggccgcgtgatgttcagcgggatcgtgcccacggtgctgccgttcctcaacaaggac
atgaagaagaaggcgctcggcgaactggtcttccagagctaccgcacggcgggactcgcg
gagacggtggccatgctcgatcgcctcaaggaattcggcttccgcaacgcgaccaagggc
ggtgtctcgattggtatcgaagacctgcacattccgaaggagaagcaggtgcttctcacg
gaagcgtcggagcgcgtggagcgtttccagcgcgcgtacgccaccggtaacatcacgaac
ggcgaacgctacaacaaagtcatcgacacgtggacgcacgcgaacacggacattgcggac
gccatggtcaagaccatgcgcgaatcgcagggcgggttcaacccggtgttcatgatgttc
gactccggttcacgtggtagccgcgaccagatccgtcagctggcgggtatgcgtggcctc
atggcgaagccgcagaagaagctcaccggtggtatcggcgaaatcatcgaaaatccgatc
aagtcgaacttccgtgaaggcttgtcggtgcttgagtacttctcgtccacgcacggtgcc
cgtaagggtctggccgacacggcgctcaagacggccgacgccggttacctcacgcgtcgt
ctggtggacgtcgcgcaggatatgacgatcgccgaagaggattgcgggacgatcctcggc
atcgacacggccgcgctgaaggaaggcgaagacgtgatcgagccgttggccgagcgtctc
gttggcaacgtggcggccgaagaagtgtttgaccccatggagcgtgacgaagcgggtcgt
ccgcgcctgctggtggaagccggttcgctcatctcggaagagacggcgcaggccatcgaa
gatgcgggcatcgaaacggtgaagatccgttccgtgctcacctgcgaagccaagcgcggc
ctctgccgcatgtgctacggccgcaacctggccaccatgcagatggtggatctgggcgaa
gcggtcggtatcatcgcggcgcagtccatcggcgagccggggacgcagctgacgctccgt
acgttccacgtcggtggtacggcggcgcgtatcgccgaacagacggcgcgcaagaccaag
aaggccggtgtgatcgagttcggtgatcgtctcgtgacggtcatcaacccggacggccag
aaggtcgtgacgtcgtacgaaggcgaactgatcatcaaggcatcggccgacaagaacgcg
ctcatcgaagcgcgtctgcaggtgccgctcggtgcgtacctcatggtggaagacggtcag
tcggtcaagaaggacgacacggtcttcacgtgggatccgtactccaaccccatcatcgcc
gacgtcgagggcacgattcgcttcgtggatctcgtcgaagacgagtcgctgtcggaagag
ctcgacgaactgaccggtctgcgtcagcgtgtcgtgatcgaagaccgcgaaaagaagctg
cacccgcacatcgagatctggcagaacaagggcggcaaggagaagcgcgtgcgcgacttc
atcctcccggtgggcgccgtgatcacgattgaagacggccacgagatcaaggctggtacg
atcatggccaagatcagccgcgaggcctacaagacgcgcgacatcaccggcggtctgccg
cgtgtggccgagctcttcgaagcccgtcgtccgaaggatccggccaccatttccgaaatc
gacggcttcgtccggttcggcgagatcaagcgcggcaagcgcgaagtcttcgtccgtccg
gccatggtcgacaagggcgtgtggcaggtggacgagtcgcaggccgagcaggtgtacgaa
gtgccgtcaggcaagcacttgcgtgtgcacgagggcgatcgcgtgcgcgccggtgaccgt
atcagcgaaggccccgtcaatccgcacgacattctgcgcatcaagggcccgcgcgcggta
caggagtatctgctcaacgaagtgcaggaggtctatcgcctgcagggcgtgaagatcaac
gacaagcacattggcgtgatcgtcaagcagatgctgcagaaggtgcggatcgtggagtcg
ggcgacaccgagatgctcgaaggcgagcatgtcgatcgcgcggtcttccgcgagaccaac
gaggaggccaagaagcggaagatcacgccggcaacggcggagccgctgctccttggtatc
acgaaggcctcgctcaccacgcagtcgttcgtgtcggcggcctccttccaggagaccacg
cgcgtcctcaccgacgcggccattcgtggctcgcgcgacgatctgctggggctcaaggaa
aacatcatcatcggtcacctcatcccggccggtacaggcatgtatcgctaccaggaagtg
gacgtcgagagcgatgcgctccccgagccggagccgctgccggaagccctcgagccgaac
tttgaagccctgcttccgagctttgagccgtcggcattcaccatgcccgacgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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