KEGG   Paraglaciecola psychrophila: C427_4504
Entry
C427_4504         CDS       T02535                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
gps  Paraglaciecola psychrophila
Pathway
gps03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    C427_4504
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gps03021]
    C427_4504
   03400 DNA repair and recombination proteins [BR:gps03400]
    C427_4504
Enzymes [BR:gps01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     C427_4504
Transcription machinery [BR:gps03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     C427_4504
DNA repair and recombination proteins [BR:gps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      C427_4504
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2
Other DBs
NCBI-ProteinID: AGH46603
UniProt: K6ZI34
Position
complement(4358957..4359946)
AA seq 329 aa
MSGSVTEFLKPRLVEIDNVSSTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDVIEILLNLKGLAVRLEGKTEATLTLVKSGAGPVLAGDIQHDGD
VEIVNPDLLICTLTGEAELSMRIKVEMGRGYVPASTRRSSEEDDRPIGRLLVDASFSPVD
RISYNVESARVEQRTDLDKLIIDMETNGTIDPEEAIRRAATILAEQLDAFVELRDISEPV
EKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPESIAEKD
NT seq 990 nt   +upstreamnt  +downstreamnt
atgtcgggttctgtaactgaattcttaaaaccaagattagttgaaattgataacgtctcg
tcaactcgcgcaaaggtcacacttgaacctttagaacgtgggtttggccatacgctaggt
aacgcgttacgtcgcatcttattgtcttcaatgccaggatgtgctgtaactgaagtcgaa
atcgatggtgtgttgcatgaatacagcaccaaagaaggcgtacaagaagacgttattgaa
atattgcttaacctaaaaggtttggccgtgcgtcttgaaggcaaaactgaagcaacacta
actctagtgaaatccggtgcgggaccagttttagctggtgatatccagcatgatggagat
gtggaaattgttaaccctgaccttttaatttgtactttgactggcgaagctgaactcagc
atgcgtatcaaagtagaaatgggtcgaggttatgttcctgcgtcaactcgccgctcttca
gaagaagatgatcgacctattggtcgtttattagtggatgcttcatttagcccagttgat
cgtatatcttacaatgttgagtctgctcgagtagagcaaagaaccgaccttgataagttg
atcattgatatggaaacaaatggcacaattgatccggaagaagcgatacgtcgtgcagct
acaattttagctgaacaattagacgcattcgttgaacttcgtgatatatctgagccagtt
gaaaaagaagagaaaccggaatttgacccgattcttcttcgacctgttgatgatttagag
ctaactgtacgttcagctaactgtttgaaagccgaagccattcaatatattggtgaccta
gtacaacgcaccgaagtagagttgttaaagactcctaacttgggtaaaaagtctcttact
gagataaaagatgtgctagcttctcgtggactttctctaggcatgcgcttagaaaactgg
ccaccagagtcaatcgctgaaaaagattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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