KEGG   Gibbsiella quercinecans: AWC35_10785
Entry
AWC35_10785       CDS       T05060                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
gqu  Gibbsiella quercinecans
Pathway
gqu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gqu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AWC35_10785 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gqu03021]
    AWC35_10785 (rho)
   03019 Messenger RNA biogenesis [BR:gqu03019]
    AWC35_10785 (rho)
Transcription machinery [BR:gqu03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AWC35_10785 (rho)
Messenger RNA biogenesis [BR:gqu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AWC35_10785 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 AAA_25 AAA FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: ATA19776
UniProt: A0A250B143
Position
complement(2372971..2374230)
AA seq 419 aa
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaattaaagaatacgccggtttctgagctaattactctaggcgaaaat
atggggctggaaaaccttgcccgtatgcgcaaacaggacattatcttctctatcctcaag
caacatgccaagagtggggaagatatcttcggcgacggcgtcttggagatactgcaggat
ggatttggtttcctccgctccgcagacagctcctatctcgccggccctgacgacatttac
gtttctccaagccaaatccgccgtttcaacctccgcaccggtgataccatttccggtaag
attcgtccgccaaaagaaggcgagcgctattttgccctgttgaaggttaacgaagttaac
tacgacaaaccggaaaatgcccgcagcaaaatcttgtttgagaacttgacgccgctgcat
gctaactcccgtctgcgcatggagcgcggcaacggttcgaccgaagatttgaccgctcgc
gtactggatctggcatcgccaatcggccgtggccagcgtggcttgattgtggcgccgccg
aaagccggtaaaaccatgctgctgcaaaacatcgcgcagagcatcgcctacaaccaccct
gactgcgtgctgatggtgttgctgatcgatgaacgcccggaagaagtgaccgaaatgcag
cgtctggtgaagggcgaagtgatcgcttctaccttcgacgaaccggcttcccgccacgtt
caggtcgccgagatggtgatcgagaaagccaagcgcctggttgagcacaaaaaagacgtg
atcatcctgctggattccatcacccgtctggcccgtgcctacaacaccgtagtgcctgcg
tcgggtaaagtgctgaccggtggtgtggacgccaacgccttgcaccgtccgaagcgtttc
ttcggcgcagcgcgtaacgtggaagagggcggcagcctgaccatcatcgccaccgcgctg
gtggataccggttcgaaaatggacgaggttatctacgaagagtttaaaggtaccggcaac
atggaactgcacctggcgcgtaaaatcgccgagaagcgtgtgttcccggcgatcgattac
aaccgctccggtacccgtaaagaagaattgcttaccacgtctgaagaactgcagaaaatg
tggatcctgcgtaagattattcacccgatgggcgagatcgacgcaatggagttcctcatc
aacaaattggcgatgaccaaaaccaatgatgaattcttcgatatgatgaagcgctcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system