KEGG   Gossypium raimondii: 105773073
Entry
105773073         CDS       T04129                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE isoform X1
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
gra  Gossypium raimondii
Pathway
gra03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    105773073
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gra03036]
    105773073
Chromosome and associated proteins [BR:gra03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    105773073
  Chromatin remodeling factors
   NuRD complex
    105773073
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like DUF1087 Helicase_C Chromo HDA2-3 ResIII PHD CHDCT2 Myb_DNA-binding PHD_4 C1_2 SLIDE zf-HC5HC2H C1_1
Other DBs
NCBI-GeneID: 105773073
NCBI-ProteinID: XP_012450153
UniProt: A0A0D2UK31
Position
13:53747242..53761128
AA seq 1462 aa
MSSLVERLRIRSDRRPVYNLDESDDDADFVSGKSGKTEGNLEKIVRTDAKENSCQACGEG
ENLFSCATCTYAYHPKCLLPPLKAPLPDNWRCPECFSPLNDIDKILDCEMRPTVADDNDA
SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFVKAFKSNPRLRTKVNNFHRQVASNNSS
EDDFVAIRPEWTTVDRILACRGDGDDEKEYLVKYKELPYDECYWEFESDISAFEPEIERF
NKIQSRSRKSSASKQKSSLQDAVVSKKSKEFQPYEHSPEFLSGGSLHPYQLEGLNFLRFS
WSKQTHVILADEMGLGKTIQSIAFLASLFEENIAPHLVVAPLSTLRNWEREFATWAPQMN
VVMYVGTSQARAIIREYEFYHPKNHKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINLD
TTSLKPIKWECMIVDEGHRLKNKDSKLFLSLKQYTTNHRTLLTGTPLQNNLDELFMLMHF
LDAGKFGSLEEFQEQFKDISQEMQISRLHDMLAPHLLRRLKKDVMKQLPPKKELILRVDL
SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDANEAY
KQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGG
AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR
LGQTNKVMIYRLITRRSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE
LFADENDEAGKSGQIHYDDAAIDRLLDREQADSEDASVDDEADDEILKAFKVANYEVIKE
SETVAEEETQNVAVENKDTTSNSERTSYWEELLRDRYEVHKVEEFNALGKGKRSRKQMVS
VEDDDLAGLEDVSSDGEDFEAEVTDADTSAVNQPGRKPYRKRIRVDNTEPLPLMEGEGKS
FRVLGFNQSQRAAFVQILMRFGVGDFDWKEFASRLKQKSHDEIKDYGTLFLTHIAEDITD
SPTFSDGVPKEGLRIQDVLVRIAVLLLVSKKVKDASEKPGTRLFTDDIMMRYPTLKGGKF
WKEEHDLLLLRAVLKHGYGRWQAIVDDKDLRIQEVICQELNLPIINLPIPGQAGSQVQNG
ANTTNIEPTGTQTQGNGSGNDVGGEVAQGVADAVNQARVYHDPSILYHFRDMQRRQVEYV
KKRVLLLEKGLNAEYQKEFYGEMKTNEVASEQQENGKRVADMPNARTTETPSQDSECLPP
IEVIASEEISAAACNNHADRLELPQHYNKICKILEDNVHEAVQSSLNLKKNLHTLEEICG
DISRILSPAEQPVVSTAAGSQSCAARSISPPNQQPAIVTEIEMEDSQRESEPEKPAIVEV
TDIDLTSSDPLKDSSKIEDQDSSLDPMEKAADSSQTQTTGNDVMMEETGKEYGARTQSEA
ISSENERESAEKSEAGVIVLDD
NT seq 4389 nt   +upstreamnt  +downstreamnt
atgagtagcttggttgagaggcttcggattagatcagatcgaaggcctgtttacaatttg
gatgaatcagatgacgatgccgattttgtgtctggaaaatctggtaaaactgaggggaat
ttggaaaagatagtcaggactgacgcgaaagagaactcgtgccaagcctgtggagagggt
gagaatctctttagttgtgcaacatgtacttatgcataccatccaaagtgtttacttcct
ccattaaaagctccgcttcctgacaactggagatgccctgaatgctttagccctctgaac
gatattgacaagatattggattgtgaaatgcgtcctactgtggctgatgataatgatgct
tccaagctgggttcaaagcaaatatttgtgaaacagtatcttgtgaagtggaaaggatta
tcatatttgcattgtacttgggtacctgagaaggaatttgtaaaagctttcaagtccaat
cctcgtttaaggactaaggtgaacaatttccatcgacaagtggcatcaaacaatagctct
gaagatgactttgttgccattagacctgagtggactacagttgatcgcattcttgcttgc
aggggagatggtgacgacgagaaggagtaccttgtcaagtataaagaacttccctatgat
gaatgttattgggagtttgaatcagatatatctgcatttgaacccgaaattgagagattt
aataaaattcaatccagatctcgtaaatcttctgctagtaagcaaaaaagcagccttcaa
gatgctgttgtgtccaagaagtcaaaggaatttcaaccatatgaacatagtcctgaattt
ctttctggaggctcgctgcatccttaccaacttgaagggttgaacttcttgcgtttttct
tggtccaaacaaacacatgtaattcttgctgatgagatgggccttggtaaaaccatccag
agcattgcatttttagcatcactttttgaagaaaacattgctcctcatttggtagtagca
ccactttcaacactacggaactgggaaagggagtttgctacatgggctccccaaatgaat
gttgtcatgtatgttggcacttcccaagctcgtgcaattataagggaatatgaattttat
catccaaaaaatcataagaagatcaagaaaaagaaatctggtcaaattgtaagtgaaagc
aagcaagatagaataaaatttgatgtcctgttaacatcatatgagatgattaacttggac
acaacatcattgaagccaataaagtgggagtgcatgattgttgatgaaggtcatcggctc
aagaacaaggattcaaagttgtttctttcactgaagcagtataccactaaccaccgcact
cttttgactggaacgcctcttcagaacaatctggatgaacttttcatgctaatgcacttc
cttgatgctggaaagtttggaagtttagaggagttccaggagcaatttaaggatatcagt
caggagatgcagatttcaagacttcatgacatgttggccccacatctccttagaaggctg
aagaaggatgtcatgaagcaacttcctcccaagaaagaacttattttacgtgttgattta
agtagcaagcagaaagaatattacaaggcgattttgactcgtaactatcagatacttacc
cgacgtggtggtgcacaaatatctctcattaatgtggttatggagttgcgaaagctatgt
tgtcatccctatatgttggaaggggtagaaccagatatcgaagatgcaaatgaagcttac
aaacagctcctggaatcctctgggaaattgcaactgttggacaagatgatggtaaagctt
aaagaacagggtcatagagttcttatatattcacagttccagcacatgttggacttactg
gaggattactgtacttacaagaagtggcagtatgaacgtatagatggaaaggttggtggg
gctgagaggcaaatacgcatagatcggtttaatgccaaaaattcttcccggttctgtttt
ttgctttccactagagctggtggcttgggtataaatcttgcaactgctgatacggttatc
atatatgatagtgattggaatccccatgctgatttacaagcaatggctagagctcatcga
cttggacaaacaaacaaggtgatgatttatcgactcataacaagaagatccatagaagaa
aggatgatgcagatgactaagaagaagatggttttggagcatcttgttgttggtaggcta
aaagctcaaaatattaatcaggaagagttggatgatatcatcagatatggttcaaaggaa
ctatttgctgatgagaatgatgaagcagggaagtctggtcaaattcattatgatgatgct
gctatcgatagattattggatcgtgaacaagctgacagtgaagatgcttcagtggatgac
gaagcagatgatgaaattttgaaggccttcaaggtagctaattatgaagttataaaggaa
tcggaaactgttgcagaggaagaaactcaaaatgtggctgttgaaaataaagatactacg
agcaattctgaaagaacaagttactgggaggagttgttacgagacagatatgaagttcat
aaagttgaggagtttaatgctttgggaaaaggaaagagaagccgtaagcagatggtttct
gttgaagatgatgaccttgctggtttggaagatgtaagctctgatggtgaggactttgaa
gctgaagtaactgatgctgatacttcagctgtaaatcaacctgggaggaagccttacagg
aagagaattcgtgtggataatacggagcccctccctctaatggaaggtgaaggaaaatca
ttcagggtgctcggtttcaatcagagtcaaagggccgcatttgtacagatattgatgagg
tttggggtcggggattttgactggaaggagtttgcatctcgcttaaaacagaagagtcat
gacgaaataaaagattatggtactcttttcctgacgcatattgctgaagatataaccgat
tctccgacattttccgatggtgttcctaaagaaggtcttagaattcaagatgtcctagtt
aggatagctgtcctgcttttagtaagtaagaaggtgaaggatgcatcagaaaagcctggc
acccggctttttactgatgatattatgatgcgttacccaacactaaagggcgggaaattt
tggaaagaggaacatgatttgttgttactgcgcgcggttttaaagcatggatatggaagg
tggcaagctattgttgatgataaagacttgaggattcaggaggtgatctgtcaagagttg
aatcttcccatcataaatcttcctattcctgggcaagctggttctcaggtgcaaaatggt
gctaatacaaccaatatagaaccaacaggaacccagactcagggaaatggctctggtaat
gacgtgggaggtgaggtagcccagggagttgctgatgctgtgaaccaagcgcgagtatac
catgatccttctatattgtatcattttagagatatgcagagaaggcaggttgaatatgtc
aagaaaagggtgcttctcttggaaaagggcctcaatgcagagtatcagaaagagttttat
ggtgagatgaaaacaaatgaggtggcaagtgaacagcaagagaatggaaaaagggtcgca
gacatgccaaatgcaaggacaacagagaccccttcacaagattctgaatgcttaccgcca
atagaagtaattgcttcagaagaaatttcagcagctgcttgcaacaaccatgcagatcga
ttggaactgcctcagcattacaataagatttgcaagatattggaggacaatgttcatgaa
gcagttcagtcaagcctcaatctaaagaagaacctccatacgttggaagaaatttgtggg
gacatatctcgaattctttcacctgcagagcagcctgtagtcagtactgctgcagggtca
cagagctgtgcagcaaggtccatttcaccacctaaccaacagcctgccattgtgaccgaa
atcgagatggaggactcacaaagagaatctgagcctgagaaacctgctatcgtagaagta
actgatatagatttaaccagttctgatccacttaaagacagcagcaaaatagaggatcaa
gattcgagtttggatccaatggaaaaagcagcagattcatctcagacgcagactactgga
aatgatgtgatgatggaagaaacagggaaagaatacggcgccaggactcaatccgaggct
atatctagtgaaaatgaaagggaaagtgcagagaaatctgaagcaggggtcattgttttg
gatgattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (15)   
   Pfam (15)   
All databases (30)   

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