KEGG   Christiangramia salexigens: LPB144_06330
Entry
LPB144_06330      CDS       T04586                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
grl  Christiangramia salexigens
Pathway
grl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:grl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LPB144_06330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:grl03021]
    LPB144_06330
   03400 DNA repair and recombination proteins [BR:grl03400]
    LPB144_06330
Enzymes [BR:grl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LPB144_06330
Transcription machinery [BR:grl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LPB144_06330
DNA repair and recombination proteins [BR:grl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LPB144_06330
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 YqfD RnfC_N
Other DBs
NCBI-ProteinID: APG60058
UniProt: A0A1L3J4J6
Position
complement(1397078..1400890)
AA seq 1270 aa
MLAKQTERLSFSSVKNKPAYPDFLDLQIKSFQDFFQLETKSEERGNEGLYNTFLENFPIT
DTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYLGRKL
AARVLNTWYEDFVDEDTGEVVSIERNEIVLDRDTELEKDHIEEILETGSKTILLHKEDNQ
TGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEV
GRYRMNKKLGLEVEMDKQVLTKVDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNGMGFIETPYRSVSDGKVNSSEEPIYLSAEEEEGKKIAQANIPLKDDGTIDTDRVIARM
EGDFPVVDPKEVHYTDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRTDSP
IVGTGLERQVATDSRVLINAEGEGEVEYVDANKIIIKYDRTDEERMVSFDDDSKTYNLIK
FRKTNQGSCINLKPIVRVGDRVTKGQVLCQGYATEAGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDEHGMIRVGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLSGVVIDKKLFA
RAIKDKRKRAQDKEDVAALEKKYDAKFALLKSQLVEKLFAIIGGKTAQGVQNDLGEEVLP
KGKKYTLKMLNSVDDYTHLTTGTWTTDDHLNALVADLIHNYKIKENDLQGNLRREKFTIS
VGDELPSGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKNGKKYATPIFDGATIEQINELTDEAGIPRYGHTH
LYDGGTGERFDQRATVGVIYMLKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGEPMPEPGLPESFNVLMHELK
GLGLDLKLEE
NT seq 3813 nt   +upstreamnt  +downstreamnt
atgttagcaaagcaaactgaaagattgagtttctcttctgttaagaacaagcctgcttat
ccggactttctggatctgcagattaagtcttttcaggacttctttcaattagagacaaaa
tcagaagagcggggaaatgaaggtctttacaacaccttcctcgaaaacttccccattacg
gacacccgtaatcaatttgtactagaattcttagattattttgtggacccgccgagatat
tccattcaggaatgtatcgaacgcggactgacctacagtgtaccgcttaaggctagactt
aagttatattgtaccgaccctgaacacgaagattttgaaaccatcgtacaggacgtatat
ttgggaaccatcccttatatgacacctagtggaacattctgtattaatggtgcagagcgt
gttgtagtttctcagttacaccgttccccgggggttttctttggacagtctttccatgct
aatggaactaaattatattcagcccgtgtaattcctttcaaaggatcatggattgaattt
gctaccgatattaacagcgtgatgtacgcgtatatcgatcgtaagaaaaaattacctgtt
actactcttttccgtgccattggatttgaacgtgacaaggacatccttgagatctttgac
cttgctgaagaagttaaggtttctaagacagggcttaaaaaatatcttggacgtaaactt
gctgccagggtacttaatacatggtatgaggatttcgtagatgaagatactggtgaagtt
gtttctatcgagcgtaacgagatcgttcttgaccgtgatactgaattagaaaaggatcat
atagaagagattcttgaaaccggaagcaagactatcctacttcataaagaggataatcaa
accggtgattatgctattattcataatacattacaaaaagatcctactaactctgaaaaa
gaggcagtagaacatatttaccgtcagcttcgtaatgctgaaccgccagatgaggaaaca
gcacgtggaatcatagataagcttttcttctcagatcagcgttatagtcttggtgaagta
ggtagatatagaatgaataaaaaacttggtcttgaagttgaaatggataagcaggtgctt
accaaagtagatatcattaccattgtaaaatatcttattgagcttattaactctaaggct
gagattgatgatattgatcacctgtctaaccgtcgtgttagaactgtaggggagcaatta
tctcagcaattcggtgtaggacttgctcgtatggcaagaactatccgtgagagaatgaac
gttcgtgataacgaggtgtttactccaatagatttgatcaacgcgaagacactttcttct
gtgatcaactcgttctttggtacaaaccagttatctcagttcatggaccaaacgaaccct
cttgcagagatcacgcataagcgtagactttcggcattaggaccaggtggactttcaaga
gaaagagccggtttcgaggttcgtgatgttcactatactcactatggtagactttgtcct
attgaaacacctgaaggaccaaacattggtcttatttcttcactttctgtatatgcaaaa
gtgaatggaatgggattcattgaaactccttatagaagcgtttccgatgggaaggtaaat
tcttctgaagagcctatttatttaagtgcagaggaagaagaaggtaagaaaattgctcag
gctaacattccattaaaggatgatggtacaatagatacagatcgtgtaattgcacgtatg
gagggtgacttcccagtagttgatcctaaagaggttcattataccgatgttgctccaaac
cagatctcatctatttctgcttcattgattccatttctggaacatgatgatgctaaccgt
gccctgatgggatctaacatgatgcgccaggcagtacctttattgagaacagattctcca
atcgtgggaactggtcttgaaagacaagtagctacagattcacgagtattgatcaatgct
gaaggtgaaggagaagtagaatatgtagatgctaataagattattattaagtatgaccgt
acagacgaagagcgtatggtaagttttgatgatgattcgaaaacttataatcttattaaa
tttagaaaaaccaaccagggatcctgtatcaaccttaagcctatcgtaagagtaggcgac
agggtaacaaaaggacaggttctttgccagggatatgctacagaggcaggtgaacttgca
cttggtagaaacatgaaggttgccttcatgccttggaaaggttataattttgaggatgcg
atcgtaatttcagaaaaagtggtaagagatgatattttcacctctatccatatcgatgaa
tattccttagaagtaagagatacaaaactgggtaacgaagaacttaccaatgatattcct
aacgtttcagaagaggctactaaagaccttgatgagcacggaatgattagagtaggtgct
gaagttaagccaggtgatatattaattggtaagatcacaccaaaaggtgagagcgatcca
acgccggaagaaaaactacttcgtgcgatctttggtgacaaagctggtgatgttaaagat
gcttctttaaaagcttctccatcattaagtggtgtggttatagacaagaaattgttcgca
agagcaattaaggataagcgtaaaagagctcaggataaagaagatgttgctgcacttgag
aaaaagtacgatgctaaatttgcattgcttaaatctcagctggtagaaaagctttttgcg
atcataggtggtaaaaccgcacagggagtacaaaacgaccttggagaagaagttcttcca
aaaggtaagaagtacactctaaaaatgcttaattctgtagatgattatactcaccttact
acaggaacctggacaacagatgatcatctgaatgcccttgttgcagatcttatccataat
tacaagatcaaagagaacgatcttcagggtaacctaagaagagagaagtttacgatctct
gttggagatgagcttccttccggaattcttaagcttgctaaagtttacatcgctaagaaa
cgtaaacttaaagtaggggataagatggcaggacgtcacggtaacaaaggtattgttgca
agaatcgttcgtcaggaagatatgcctttccttgaagacggaactccagtggatatcgta
ttgaacccacttggtgtaccttctcgtatgaacattggtcagatctacgaaacagttctt
ggatgggccggtcagaaaaatggaaagaaatatgctactccaatttttgatggtgcaact
attgagcagatcaacgagctaaccgatgaagcaggaatcccaagatacggtcatacgcat
ctatatgatggtggaaccggagagcgttttgatcaaagagcgactgtaggagttatctac
atgcttaaacttggtcacatgatcgatgataagatgcatgctcgttcaattggaccatac
tcgctaattactcagcaaccacttggtggtaaagcacaatttggtggtcagcgatttgga
gagatggaggtttgggctcttgaagcttacggagcatccagtactctaagggaaatctta
accgtgaagtctgatgacgtgatcggaagagccaagacctatgaggctattgtgaagggt
gagccaatgccagaacctggactaccggaatctttcaacgtgttaatgcacgaattgaaa
ggtcttggattggatttaaaacttgaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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