KEGG   Parageobacillus thermoglucosidasius C56-YS93: Geoth_3633
Entry
Geoth_3633        CDS       T01531                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
gth  Parageobacillus thermoglucosidasius C56-YS93
Pathway
gth03030  DNA replication
gth03410  Base excision repair
gth03420  Nucleotide excision repair
gth03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gth00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Geoth_3633
   03410 Base excision repair
    Geoth_3633
   03420 Nucleotide excision repair
    Geoth_3633
   03430 Mismatch repair
    Geoth_3633
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gth03032]
    Geoth_3633
   03400 DNA repair and recombination proteins [BR:gth03400]
    Geoth_3633
Enzymes [BR:gth01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Geoth_3633
DNA replication proteins [BR:gth03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Geoth_3633
DNA repair and recombination proteins [BR:gth03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Geoth_3633
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Geoth_3633
   MMR (mismatch excision repair)
    DNA ligase
     Geoth_3633
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Geoth_3633
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT RNA_pol_A_CTD BRCT_2 HHH_3 zf-NADH-PPase HHH_8
Other DBs
NCBI-ProteinID: AEH49467
Position
complement(3560012..3562024)
AA seq 670 aa
MERQAAIKRIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSP
SQRVGGQALDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEVGDDVAYVCELKIDGLA
VSVRYEDGYFVQGATRGDGVTGEDITENLKTIRSLPLRLNEPVTLEARGEAYMPKASFER
LNEQRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELGIASHSAALD
YLQQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFAQQEQLGATA
KSPRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFI
REKDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTHCPECASELVRIEGEVAL
RCINPKCPAQIREGLIHFVSRQAMNIEGLGEKVISQLFREGLIHDVADIYRLTKDQLIDL
ERMGEKSATNLLHAIEASKQNSLERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATKEE
LMAIHEIGEKMADSIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTV
VLTGKLESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDET
RFLEEIEQSK
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggaacgacaagctgcgatcaagcgaatcgaagagcttcgcgaacttttgaatcaatac
aattatgaatattatgtgcttgaccgtccatctgtgccggattcggaatacgaccggctt
atgcaagaacttatcgcgttagaagaacaatatccggatttaaaaacgaaagattctccg
tcgcaacgcgttggcggacaggcgttagacgcgtttcaaaaagtggaacatcgcacgccg
atgttaagtctcgcaaacgcatttaacgaaggggatttgcgcgattttgaccgccgtgtg
cgccaagaagtcggcgatgatgtcgcttatgtttgcgagctgaaaatcgatgggcttgct
gtatctgtccgttatgaagacggctatttcgttcaaggggcgacgcgcggcgacggagtg
accggagaggatattaccgaaaacttaaaaacgatccgctctttgccgcttcgcttgaat
gagccggtaacgttagaagcgcgcggcgaagcgtacatgccgaaagcgtcgtttgagcgg
ttgaacgaacagcgccgccagcgcggggaagagctgtttgccaatccgcgcaacgctgct
gcgggctctttgcgccagctcgatccgaaaatcgcggcatcgcgccatcttgatttattt
gtttatggtcttgcgaacgcggaagaattagggatcgcctcacatagcgcggcgctcgat
tatttgcagcagcttggatttaaaacaaatccggaacgccgccgctgcgctaatatggac
gaagtgatgcaatttgtgaatgaatggcaagaaaaacgtccgcagctgccttatgaaatt
gacgggattgtcataaaagtcgactcgtttgcgcaacaagaacaacttggcgcgacggcg
aaaagtccgcgctgggccatcgcttataaatttccggccgaggaagtggtaacgaagctg
attgacatcgagttaaatgtcgggcgcacgggagtggtgacgccgacagcgattttggag
ccggtgcgtgtggcgggtacaacggtgcaacgtgctacccttcataacgaggattttatt
cgtgagaaagatatccgcattggggattcggtcattatcaaaaaagcgggggacattatt
ccggaagtcgtgaatgtcgtgccggaccggcgtacgggagaagaagtgccgtttgtcatg
ccgacgcattgcccggaatgtgccagcgaattggtccggatcgaaggcgaagtagcgctc
cgctgcattaatccaaaatgtccggcgcaaattcgtgaaggattgattcacttcgtatcg
cgccaagcgatgaacatcgaggggcttggggaaaaggtgatttcccagctgttccgtgaa
ggcctcattcatgatgttgctgacatttatcgcttgacaaaggatcagcttatcgatttg
gaacggatgggagaaaaatcggcgaccaatttgctccatgccattgaagcttccaaacaa
aattcgttggagcgccttctctttggccttggaattcgccatgtcggtgcaaaagcagcc
aaagtgttagcggaacatttcgaaacgatggaccgcctgcaaaacgcgacaaaagaagaa
ttaatggcgattcacgagatcggcgaaaaaatggccgattcgattgtcacatattttgcc
aagccggaagtaaaagagcttttaaatgaactgcgtgcttatggtgtcaatatggaatac
aaggggccgaaaacgccaaaacctggcgacgttcattcgtattttgccggaaaaaccgtt
gtattgacaggaaaactcgagtcattatcgcgcaatgaggcgaaagaaaaaattgaacag
cttggcggcaaagtgaccggcagcgtgagcaaaaatacggatttagtcattgctggggca
gacgcaggctcgaaactggcgaaagcgcagcagctccatatcgagatttgggatgagaca
agatttcttgaagaaattgaacaaagtaagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (56)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (88)   

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