KEGG   Geobacillus thermoleovorans KCTC 3570: GT3570_01500
Entry
GT3570_01500      CDS       T04710                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
gtk  Geobacillus thermoleovorans KCTC 3570
Pathway
gtk03030  DNA replication
gtk03410  Base excision repair
gtk03420  Nucleotide excision repair
gtk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gtk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GT3570_01500 (ligA)
   03410 Base excision repair
    GT3570_01500 (ligA)
   03420 Nucleotide excision repair
    GT3570_01500 (ligA)
   03430 Mismatch repair
    GT3570_01500 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gtk03032]
    GT3570_01500 (ligA)
   03400 DNA repair and recombination proteins [BR:gtk03400]
    GT3570_01500 (ligA)
Enzymes [BR:gtk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     GT3570_01500 (ligA)
DNA replication proteins [BR:gtk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     GT3570_01500 (ligA)
DNA repair and recombination proteins [BR:gtk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     GT3570_01500 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     GT3570_01500 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     GT3570_01500 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      GT3570_01500 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT RNA_pol_A_CTD HHH_3 BRCT_2 HHH_8 Bep_C_terminal LemA
Other DBs
NCBI-ProteinID: AMV09650
UniProt: A0A1C3D5E1
Position
274017..276029
AA seq 670 aa
MDRQQAERRAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSP
TQRIGGPPLEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVRQEVGEAAYVCELKIDGLAV
SVRYEDGYFVQGATRGDGTTGEDITENLRTIRSLPLRLKEPVSLEARGEAFMPKASFLRL
NEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIESHSEALDY
LQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAK
SPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIR
EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTHCPECESELVRLDGEVALR
CLNPKCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVHDVADLYRLTKEQLIGLE
RMGEKSATNLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEEL
MAVPEIGEKMADSIIAFFSQPEAAELLHELRLYGVNMAYKGLKRAAEAPADSAFAGKTVV
LTGKLASMSRNEAKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESR
FLQEISRGKR
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggaccgccaacaagccgaacggcgcgcggccgagctgcgcgaactgctgcaccgctat
ggctacgaatattatgtgctcgaccggccgtccgtcccggacgccgagtatgaccggctc
atgcaagagttgatggccatcgaggaacagtatccggaattgaaaacgagcgactcgccg
acccagcgcatcggcggccctccgcttgaggcgtttcgcaaagtgacgcatgttgttccc
atgatgagtctcgcgaacgcgtttgacgaaggggatttgcgcgattttgaccgccgcgtc
cgccaagaggtcggcgaagcagcgtacgtgtgcgagttgaaaatcgatggtctcgctgtc
tccgtccgctatgaagatggttatttcgtccaaggggcgacgcgcggcgacggaacgacc
ggcgaggacattacggaaaatttgagaacgatccgttcactgccgcttcggctgaaggag
ccggtgtcgctggaggcgcgcggcgaggcgttcatgccgaaagcgtcgtttttgcgcttg
aatgaggagcgaaaagcccgaggcgaggagctgtttgccaacccgcgcaacgctgcggct
ggctcgctccgccagctcgatccgaaagtggcggcgtcgcgccagctcgatttgttcgtt
tatggtttggccaatgctgaagagcttggcattgagtcgcacagcgaggcgctcgactac
ttacaggcgcttgggtttaaagtgaatcccgagcggcggcgctgcgccaacatcgatgag
gtgatcgccttcgtcaacgagtggcacgaaaaacggccgcagctgccgtacgagatcgac
ggcatcgtcattaaagtcgactcgttcgcccaacagcgggagcttggtgcgacggcaaaa
agcccgcgctgggcgatcgcctacaaattcccagccgaggaagtggtgacgacgctcatc
ggcattgaggtgaacgtcggccgcacgggcgtcgtcactccgacagcgatcttagagccg
gtccgcgtcgccggcacgaccgtgcagcgcgccactcttcataatgaagattttatacgg
gaaaaagacattcgcatcggcgatgcggtcatcattaaaaaagcgggcgacatcatcccg
gaagtggtcggcgtcgtcgtcgaccggcgcgacggggatgaaacgccgtttgtgatgccg
acgcattgtccggaatgcgaaagcgagctcgtccgcctagatggagaagtggcgctccgt
tgcttaaacccgaaatgcccggcccagctgcgcgaacggctcatccattttgcctcaaga
gcagcgatgaacattgaagggttgggcgaaaaagtcgtcacccaactgtttaacgctggc
ctcgtccacgatgtcgccgatttgtaccggctgacgaaagaacagctcatcggtttggaa
cggatgggcgaaaagtcagcaaccaacttgcttgcagcgattgaggcatcgaagcaaaac
tcgctcgagcggttgctgttcggtcttggcatccgctacgtcggagcgaaagccgcccaa
cttttggctgagcattttgaaacgatggagcggctggaaaaagcgacgaaagaggaattg
atggccgtgccggaaattggcgagaaaatggcggactcgatcatcgccttcttttcccag
ccagaagcggccgagctgctccatgagctgcggctttacggcgtcaacatggcatacaaa
gggctgaagcgggcggctgaagcgcctgctgactccgccttcgccggcaaaacggtcgtc
ttgaccggcaaactcgcgtcgatgtcgcgcaatgaggcaaaagaagagattgaacggctc
ggcgggcgcgtcaccggcagcgtcagccgcagcaccgacatcgtcatcgccggtgaggac
gccggatcgaagctggagaaagcccagcagcttggcattgagatttgggacgaatcacga
tttttgcaagagatcagcagggggaaacgatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (34)   

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