KEGG   Gardnerella vaginalis 409-05: HMPREF0424_0106
Entry
HMPREF0424_0106   CDS       T01146                                 
Symbol
gatB
Name
(GenBank) aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit
  KO
K02434  aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
Organism
gva  Gardnerella vaginalis 409-05
Pathway
gva00970  Aminoacyl-tRNA biosynthesis
gva01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:gva00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    HMPREF0424_0106 (gatB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03029 Mitochondrial biogenesis [BR:gva03029]
    HMPREF0424_0106 (gatB)
Enzymes [BR:gva01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.5  Carbon-nitrogen ligases with glutamine as amido-N-donor
    6.3.5.6  asparaginyl-tRNA synthase (glutamine-hydrolysing)
     HMPREF0424_0106 (gatB)
    6.3.5.7  glutaminyl-tRNA synthase (glutamine-hydrolysing)
     HMPREF0424_0106 (gatB)
Mitochondrial biogenesis [BR:gva03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    HMPREF0424_0106 (gatB)
SSDB
Motif
Pfam: GatB_N GatB_Yqey YqeY
Other DBs
NCBI-ProteinID: ADB13590
Position
125706..127205
AA seq 499 aa
MAEKLMKYADAVEQFDPVFGLETHVELSTRTKLFCPAEVSFGGEPNTQLTPVSLGLPGSL
PVVNKTAVDYAIKLGLALHCEIAEWSQFARKNYFYPDMPRDYQISQYDKPTNGNGYLDVE
LEDGTVFRVPIERAHIEDDAGKNTHVGGADGRIEGANHSLVDYNRAGVPLIEIVTKPIEG
AGSRAPEIAGAYMRAIRDIVRALNISHARMEQGNMRADVNVSLRRKPTDSFGTRSETKNV
NTFRGIEKTLQYEIRRQAAILSEGGEILQETRHWDEATQTTAGGRVKSDADDYRYFPDPD
LVMLHITKEHIERMKAQMPEMPRERRNRLQSEWGISDLEMRDILNADALDLVEETVKAGA
TAAGAKKWWLGELAREANTRGVTLEELPITPQDVAQVEKLIASGNLNDKLAKQTVACVLA
GEGKPDEVVKKHGFKVMNDDGALEAAVDAALAADPEVAEKLKSGNMKPMGAIIGAVMRAT
KGQADAKAVTKIVMAKIKG
NT seq 1500 nt   +upstreamnt  +downstreamnt
atggctgaaaaacttatgaaatacgccgatgctgtggagcaatttgacccagttttcggc
ttggaaactcacgttgagcttagcactcgtacgaagctgttctgcccagcagaagtatct
tttggcggcgaaccaaacactcagctaacacctgtaagccttggtttgccaggctctttg
ccagttgtaaacaagactgcagttgattacgcgattaagcttggcttagcgttacattgc
gagattgctgagtggagccagttcgctcgtaagaactacttctacccagatatgcctcgc
gattaccagatttcccagtacgataagcctactaatggcaacggctacttggatgttgag
ctggaagatggcactgtgttccgcgttccgattgagcgcgctcacattgaggatgacgct
ggcaagaatactcacgttggcggcgcagatggccgaatcgaaggtgcaaatcattctttg
gttgattacaatcgcgcaggcgtgcctttaatcgagattgtaactaagccaatcgaaggt
gctggcagccgcgctccagaaatcgcaggcgcatacatgcgcgctattcgcgatattgtt
cgcgctctcaacatctcccacgctcgcatggagcagggcaatatgcgcgcagacgtaaac
gtttcgcttcgcagaaagccaaccgattcgttcggcacacgttctgaaactaagaatgtg
aacacattccgcggtattgaaaagacgctgcaatatgagattcgccgtcaggctgctatt
ttgagcgaaggcggcgagattttgcaagagacacgtcactgggatgaggcaactcagact
actgctggcggccgcgtaaagtctgacgccgacgattatcgctacttcccagacccagat
ttggttatgcttcacattactaaagagcatattgagcgcatgaaggcacaaatgccagaa
atgcctcgcgagcgccgcaaccgcttgcaaagcgaatggggtattagcgatcttgaaatg
cgcgatattcttaacgcggatgctcttgatttggttgaagaaaccgttaaggctggagca
actgcagctggtgctaaaaagtggtggcttggtgagcttgctcgcgaagcaaacactcgt
ggcgtaactttggaagaattgcctattactccacaagacgttgcgcaagttgaaaagcta
attgcaagcggcaatcttaacgataagctcgctaagcaaactgttgcatgcgttttggct
ggcgagggtaagcctgatgaagttgttaagaagcacggattcaaggttatgaacgacgac
ggtgctttggaagctgctgttgacgctgctcttgcagccgatcctgaagttgccgaaaag
cttaagtctggaaacatgaagccgatgggtgcaattattggcgctgttatgcgtgcgact
aaaggtcaggctgatgctaaggctgttactaagattgtgatggcaaaaatcaaaggctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (10)   
   KEGG COMPOUND (10)   
Chemical reaction (4)   
   KEGG ENZYME (2)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (39)   

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