KEGG   Halomonas sp. KO116: KO116_02050
Entry
KO116_02050       CDS       T03800                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
hak  Halomonas sp. KO116
Pathway
hak03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hak00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KO116_02050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hak03019]
    KO116_02050
Enzymes [BR:hak01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     KO116_02050
Messenger RNA biogenesis [BR:hak03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     KO116_02050
SSDB
Motif
Pfam: DEAD Helicase_C AAA_19 ResIII P-loop_SecA Gag_p24 AAA_22 COMPASS-Shg1
Other DBs
NCBI-ProteinID: AJY50529
UniProt: A0A0D5M2B5
Position
complement(2189758..2191014)
AA seq 418 aa
MSFSELGLHADLLRAVTAQGYTEPTPIQRQAIPVVLEGRDMLASAQTGTGKTAGFTLPML
QRLNTGKRPGKRQVRALVLTPTRELAAQVGESVSTYGQHLALRSHIIFGGVGQQPQIDAL
KAGLDVLVATPGRLLDLHQQGHVDLSCVEILVLDEADRMLDMGFIHDIKRLLRLVPKKRQ
NLLFSATFSNEIQTLAQQLLDNPAMIEVAPRNATADKIEQAIYRVDREKKRELLAHLIQQ
NGWFQVLVFTRTKHGANRLAEQLSKQDIPSMAIHGNKSQGARTRALTAFKSGDLQVLVAT
DIAARGLDINELPHVVNFDLPNVAEDYVHRIGRTGRAGSNGEAVSLVCVDEDALLGNIER
LIKQKLTKHIEPGFEPDPSIKPEPIENGRRNQRQPRAKRKPEGQSANTGGERKRRARR
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgagcttttctgaacttggcctgcacgccgatttattacgcgctgtcacagcgcaaggt
tacactgagcctaccccgatacaacgacaggctattcccgttgtacttgaaggccgcgac
atgctggccagcgcccaaaccggcactggtaaaaccgctggttttacgctgccaatgctg
caacgcttaaacaccggcaaacgacctgggaaacgtcaggtacgtgcactggtgctaacc
cctacccgtgagcttgccgctcaggtaggcgaaagcgtgtcgacctatggccagcatctg
gcactacgctcccacattatttttggtggcgtcggccaacagcctcaaatcgatgcacta
aaagccggtttggatgtactggttgccaccccaggccgcttgctggatcttcaccagcaa
gggcatgtggatctctcctgtgtagagattttagtgcttgatgaagccgaccgcatgctg
gatatgggcttcattcatgacattaagcgcttgctgcgtctggtccccaaaaagcgccaa
aatctgctgttctcggcgacgttctctaatgagatccagaccctggcacaacagctgctg
gataatccggcgatgattgaagtagcgccgcgtaatgctactgccgataaaattgagcag
gcgatttaccgtgttgatcgcgagaagaaacgtgagttgctggcccacttgattcagcaa
aacggctggttccaggtgctggtatttacgcgcaccaaacatggcgctaaccgccttgca
gagcagctctccaagcaggacatcccttccatggcgatccatggcaataaaagccaggga
gctcgcactcgcgcgctaacggcatttaagagcggtgacctgcaggtactcgtggccacc
gatatcgctgctcgtggactggatatcaatgagttgccccacgtcgtcaattttgaccta
cccaacgtggcggaagattatgtccaccgcattggccgcaccggtcgtgctggcagcaat
ggcgaagccgtttcattggtgtgtgtcgatgaagatgccttgctaggcaatattgagcgg
ctaatcaagcagaagctaacaaagcacattgaacctggctttgagcccgaccccagtatc
aaacctgagcccatcgaaaatggccgacgcaatcaacgtcagcctcgcgctaaacgcaaa
cccgaaggccagagtgccaataccggtggcgagcgtaaacgtcgcgcgcggcgctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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