KEGG   Halomonas sp. KO116: KO116_02358
Entry
KO116_02358       CDS       T03800                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
hak  Halomonas sp. KO116
Pathway
hak03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hak00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KO116_02358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hak03019]
    KO116_02358
   03400 DNA repair and recombination proteins [BR:hak03400]
    KO116_02358
Enzymes [BR:hak01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     KO116_02358
Messenger RNA biogenesis [BR:hak03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     KO116_02358
DNA repair and recombination proteins [BR:hak03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      KO116_02358
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Pribosyltran RecQ_Zn_bind HTH_9
Other DBs
NCBI-ProteinID: AJY50833
UniProt: A0A0D5M4X0
Position
complement(2520968..2523091)
AA seq 707 aa
MDRQNAEQLLKTALNDSSALFRSGQWEAIDAIVNQHRKLLVVQRTGWGKSSVYFISTRIL
RDRGFGVTIIISPLLALMRNQIESARRLGIRASTINSTNSHEEEAVKRALFAGQVDCLLI
SPERLANDNFVRTVLMPVADHIGLLVIDEAHCISDWGHDFRPDYRRIVAILRQLPPGVPV
LGTTATANDRVIEDIRTQLGDILIQRGPLGRESLALQAITLPDQASRLAWLANVIPTLPG
TGIVYTLTTRDADQVADWLQRQGIEASAYYSDVTPPQWLQAQGLTDKNRYREYLEDRLLC
NELKVLVATGALGMGYDKPDLSFVIHYQAPGSIVAYYQQVGRAGRAIDSALGVLIAGHED
DDIHDYFRRSAFPSDHEVSTVLDTLAQFDGLSVARIEQNANLKRSQIEKTLKILSVESPA
PVVKEGSVWRRTPIAYRPDHQRIHYLTEIRKREWQQVNDYINTKGCLMNFLRFSLDDPQS
EACGKCENCLEHPLMPTNVDAQLVHQAAAYQRNAEMPIKPRKQVNANAFQQYGFQTSRGS
LVAGLQAQEGRVLSRWNDGGWGRLVKQGKQQSQFSDELVEAMAEMIEQRWQPQPRPGWVC
AVPSFNHPHLVPEFAWRLANRLGLPYIEAVRKIRHNEPQKGQQNSFHQSRNLDGVFQVAN
RLPRESVLLVDDIVDSGWTMTVIAALLQRAGTGPVFPVALASSSVND
NT seq 2124 nt   +upstreamnt  +downstreamnt
atggatagacagaacgccgagcaattgctaaaaacagccctcaatgacagctctgctcta
tttcgctctgggcaatgggaggcgattgatgcaatagtcaatcagcaccgcaagctgctg
gtggttcaacgtactggatggggtaagagttctgtttacttcataagcactcgtattttg
cgagaccgtggcttcggggtcaccatcatcatctcgcctttgctggccctgatgcgcaac
cagatcgagtcggctcgacggcttggtattagagcctccaccatcaattcgacgaatagt
catgaagaagaggctgtaaaaagggcgctgttcgcgggtcaggttgactgcttgctgata
tcaccagaacgcttagccaatgataatttcgtgcgaaccgtgcttatgccggttgctgac
cacatcgggttactggtaattgatgaagcgcactgtatctccgattggggacatgacttc
cggcctgactatcgtcgcatcgtggcaattcttcggcagcttccgcctggtgttccggtt
ctaggaacaacagctaccgctaatgacagggtcatagaggatatccgcacccagttagga
gatatcctgattcaacgtggccctctgggacgtgaaagcctagcgctgcaggcgataacg
ttaccggatcaggcttctcgacttgcctggctggccaatgtaatcccaacgttgccaggc
accggtatcgtttacactctgacgacccgcgatgccgatcaagtagccgactggctgcag
cgccagggtattgaagccagcgcctactattctgacgttactcctccgcaatggctgcag
gcgcaggggctaacggataaaaaccgttatcgtgagtacctggaagaccggctgctctgt
aatgaactcaaagtgctggtagccactggggcgttgggaatgggctacgacaaaccagat
cttagcttcgttatccactaccaagcacctggctctatcgtcgcctattatcagcaggtt
ggccgcgctgggagggctattgactctgcgcttggcgtgctgattgctggacacgaggat
gacgatattcatgactatttccggcgctctgcatttccctcggaccatgaggtcagtacg
gtgctggatacactcgcacagttcgacggtttgtccgttgcgcgcattgagcagaatgcc
aacctaaagcgcagccagatcgaaaagaccctaaaaatactcagtgtagaatcgcctgct
ccagtggtgaaggaaggcagtgtctggaggcgtacgccaatagcttatcggccagatcat
caacgcatccactacctgacagagattcgtaagcgtgagtggcagcaggtcaacgactac
atcaacaccaagggctgtttgatgaacttcctgcgcttctctctggatgacccgcagagc
gaagcatgtgggaagtgcgaaaattgcctggagcatccgctgatgccaaccaatgttgat
gcgcagttggttcatcaggctgccgcttatcagcgcaatgccgagatgccgataaagcca
agaaagcaggttaacgccaatgcgtttcagcagtatggctttcaaacaagcagagggagc
ctggtagcggggttgcaggcacaggaagggcgcgtgctctcgcgttggaacgatggggga
tggggccggctagtcaagcaaggcaagcaacagagccaattcagtgacgagttggtggag
gccatggccgagatgatcgaacagcgctggcagccccaacctcgccccggttgggtctgc
gcggtgccttcttttaaccatccgcatcttgtgccggaatttgcatggcggctagctaac
cggttgggtctaccctatatcgaagcagtgcgtaagatcaggcacaatgagccccagaaa
ggccaacagaacagcttccatcagtcccgtaatctggacggcgtcttccaagtagccaat
agactaccaagagaatctgtactgttggtcgatgatattgtggactcaggttggacgatg
accgtgatcgccgcgcttttacagcgtgccggtacggggcctgttttccctgtagctttg
gcatctagctcggtgaatgattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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