KEGG   Halomonas sp. KO116: KO116_02616
Entry
KO116_02616       CDS       T03800                                 
Name
(GenBank) Helicase superfamily 1 UvrD-related protein
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
hak  Halomonas sp. KO116
Pathway
hak03420  Nucleotide excision repair
hak03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hak00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    KO116_02616
   03430 Mismatch repair
    KO116_02616
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hak03400]
    KO116_02616
Enzymes [BR:hak01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     KO116_02616
DNA repair and recombination proteins [BR:hak03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     KO116_02616
   MMR (mismatch excision repair)
    Other MMR factors
     KO116_02616
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 PcrA_UvrD_tudor AAA_30 Viral_helicase1 AAA_12 ResIII PhoH
Other DBs
NCBI-ProteinID: AJY51091
UniProt: A0A0D5M4L7
Position
complement(2804102..2806315)
AA seq 737 aa
MKLTAEQQAVVNHTAGHARVAAVAGAGKTTTMAARVLHLLARGVPQKRILVLMFNRSAKD
DFQRRLASMAPAGQALPDVRTFHSLGHRLTQSLCRWGALAPRQLLSADWQLERLLRQASL
NVLRDAVERRDAALEGDRLETLAHFCGLVKAEMITPESLYERLNVDPDTDYFPAAFAEAE
RLLESEGVMTYADLLYRPLQALEEDSALRGRVEGFLDHVIIDEYQDINAAQQRLLSVLVG
SRAEVMAVGDANQCIYEWRGAKPDTMLENFTATFGEATDYPLSTTFRHGHALALTANHAI
AANQRRPNQLCLAAPNNPETRVSVGQGSRLLLDALMDWKAQGRAFNEASLLVRSWALSVP
FQLALLQAGIPFRLQREDRFVFRLPLVQALAGYLKLSRRPDLLRDPQQLLLLLSQPTPFV
ARERLQRLAHQLATTQQWPERHDPMLTALKPIQRRTLKKRWLLLCELPQLSAWPPAKLLR
HVVETIEAEKTLKRAAARRDKGEEDVRLLDVLIEQAQSVQDPDAFIELLERPVENQAGGV
LISTVHGAKGLEWPLVAVVGVNEEDFPHYSRDNPLSDERLEEERRLFYVAITRAQEQLLV
LHDGGVHRPSRFIAESAWQDSMRVASCLANPCAPEASLQVTSVGLVERYLTRLGRDDIVL
AAAHVEEHKATYSADTRFYPGQRLHHAVFGEGEVAAVEGNASDPVIDVRFDQAGRRRLIA
RRAPIQLLEGSQSAILS
NT seq 2214 nt   +upstreamnt  +downstreamnt
gtgaagttaaccgctgaacagcaggccgttgtgaatcataccgccggtcatgcgcgggtg
gcggccgtcgcaggcgcaggtaaaaccactaccatggccgctcgggtgctacacctgttg
gcccgtggtgtgccgcaaaagcgcattctggtgttgatgtttaaccgttccgccaaggat
gattttcagcgccgtttagcgtcaatggcgcctgccgggcaggcgctgccggatgtgcgc
acgtttcactcactaggccaccgcctaacccaaagcctatgtcgctggggcgcgcttgcg
cctcgtcagctattatccgccgattggcaattagagaggctgcttcgtcaagcgagcctt
aatgtgctgcgcgacgcagttgagcgccgtgatgctgcgctagaaggagatcggcttgaa
accttggcccacttctgcggcttggttaaagcagagatgattacccctgaatcgctctat
gaacgactcaatgttgacccggataccgactattttccggctgcttttgccgaggcggag
cggctactagagtcggaaggggtgatgacctacgctgatttactttatcgccctttgcag
gcgttagaggaagatagcgccctgcgtggtcgcgtcgaggggtttttggatcatgtcatt
attgacgagtatcaagatattaatgccgctcagcagcgccttttatccgtgctggtgggc
agccgtgccgaggtaatggcggtcggcgatgctaaccaatgcatctatgagtggcgtggc
gccaaacccgatacgatgctggaaaattttaccgccacctttggcgaggccaccgactac
ccgctatctaccacgttccgtcatggccatgccttggcgcttaccgctaatcatgccatt
gccgccaatcagcgccgccccaatcagctgtgtctggccgcgcccaataaccctgagacg
cgcgtctcggtagggcagggcagtcggctgttactggatgccttgatggattggaaggcc
caagggcgtgcgtttaacgaggccagtttgctggtgcgtagttgggcgctgtcagtacct
ttccagctggcgcttttgcaggcgggaattccgtttcggcttcagcgcgaggatcgtttt
gtctttcgtctgccgttggtacaggcactcgctgggtacttgaagctgtcgcgtcgtccc
gatctgctgcgcgatccgcagcaactattactgctgctttcccaaccgactccctttgtt
gctcgtgagcgactgcagcgattagcccatcagctggcgactacccagcagtggcctgag
cggcatgaccctatgttgacggcattaaagccgatccagcggcgtacgcttaaaaaacgc
tggttgctgctatgtgaattgcctcagctgagtgcatggccgcccgccaagctgttaagg
catgtagtggaaaccattgaggcggaaaaaacacttaaacgggcagcggcgcggcgcgat
aaaggtgaagaggatgtacgcttactcgatgtcttaattgagcaggcgcaaagcgttcaa
gacccagatgcctttatcgagctactggaacgcccggttgaaaatcaggcgggcggcgtg
ctgattagcacagtgcacggtgccaaagggcttgagtggccattggtagctgtggtgggt
gtcaatgaagaggattttccccactacagccgcgataatccgcttagcgatgagcgcttg
gaggaggagcggcggttgttctacgtagccatcacgcgcgcccaagaacagctattagtg
ctccatgatgggggcgtacaccgtcccagccgctttatcgccgaaagtgcctggcaagac
agtatgcgtgtggcctcttgtctagctaacccctgtgcgccagaagcatcgctgcaagtg
acatcggtggggctggttgagcgttatctgacgcgtttagggcgagacgacattgtgctc
gcagcggcacacgttgaagagcacaaggcaacttattcggccgatactcgcttttatccc
ggtcagcgtctgcaccatgcggtatttggtgagggtgaagtggcggcagtagagggaaat
gcgagcgacccggtgattgatgtgcgctttgaccaagctggccgacgcaggcttattgcc
cgccgagcgcccattcagctattggaaggctcgcaaagcgctattctctcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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