KEGG   Halomonas sp. KO116: KO116_04188
Entry
KO116_04188       CDS       T03800                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
hak  Halomonas sp. KO116
Pathway
hak03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hak00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    KO116_04188
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hak03021]
    KO116_04188
   03400 DNA repair and recombination proteins [BR:hak03400]
    KO116_04188
Enzymes [BR:hak01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     KO116_04188
Transcription machinery [BR:hak03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     KO116_04188
DNA repair and recombination proteins [BR:hak03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      KO116_04188
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED DOCK-C2
Other DBs
NCBI-ProteinID: AJY52649
UniProt: A0A0D5M8A4
Position
complement(4512666..4516742)
AA seq 1358 aa
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPDERHEVGLHAAFKSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDRDSSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLMRALGMNTEEILAEFFETSVFHIEKSG
FYVELVPSRLRGETATFDIKDDEGNVIVEEGRRITQKHIRQLEKAGLERLDVPMEYLFGK
TLAKDQIDSKTGELICPCNTEITPEVLERMAQGGITLVETLYTNDLDCGSFISDTLKLDA
TNSALEALVEIYRMMRPGEPPTKESAETLFNNLFFSEDRYDLSGVGRMKFNRRLRRDTDT
GSGVLDRKDILDVLRELISIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
DRQLTDDIVHLSAIEEGDFVIAQASAAVDESNKLSDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERFVARDSGVC
AVANRGGVIDSVDARRVVVRVNEDEIIGGEAGVDIYNLTKYTRSNQNTCMNQRPIVRPGD
NVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGSEEITSDIPNVGESALSKLDEAGVVYIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVDKDSRALSIERTQLDE
VRKDLQETYRIAEDATFERLQRTLDGQAVNGGPNLKKGDVLDEAYLDELPRQQWFKLRMQ
DESYNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYMAVKRRIQPG
DKMAGRHGNKGVISAIMPIEDMPFDEKGEPVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEAMLRDARGQQVAEIRDFLGQIYNTQGTRVEDLDSLTDDEIIALAKNLKGGVPMA
TPVFDGAKEHEIKHLLKLADIPESGQMALFDGRTGDAFDRPVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKNIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq 4077 nt   +upstreamnt  +downstreamnt
atggcttactcatatactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccttacttgctggcgatccagcttgattcctattacgacttcctccag
caagatcgttcgcccgacgagcgtcacgaagtcggcttgcacgcggcttttaagtccgtg
tttccgattgagagcttctccggtaatgcggcgcttgagtatgtcagctaccgtttcggc
acgccggcgttcgatgttaaggagtgccagctgcgcggcgtcacttactccgccccgctg
cgcgtgaaggttcgcttgatcatctatgatcgcgactcctcaaacaaagcaatcaaagat
attaaagagcaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttt
gttatcaacggtactgagcgggttatcgtttcccagctccaccgctcacccggtgtgttc
ttcgatcatgacaaaggtaagagtcactcttccggtaagctgctctattcagcccgggtg
attccttaccgtggttcttggttagactttgagtttgaccccaaagacaacgtctttgta
cgtattgaccgtcgccgcaaactgccggcgtcggtgctgatgcgtgcgttagggatgaac
accgaagagatcctggccgagttctttgaaaccagcgtctttcacattgagaaatccggt
ttctatgtggagctggttccgtcgcgcctgcgcggcgagacggctactttcgacatcaaa
gatgacgaaggtaatgtgatcgttgaagaggggcgtcggattacccagaagcatattcgc
cagcttgaaaaagccggtcttgagcgtctggatgtgccgatggaatatctattcggtaaa
accctggcaaaagatcaaatcgactctaaaacaggcgagctgatctgcccgtgtaatacc
gagatcacaccagaagtgcttgagcgcatggcccagggcggcattaccctggtcgaaacg
ctctacaccaatgatctcgactgcggttcattcatttccgacaccttgaagctggatgct
actaattccgcgcttgaagcgttagtcgaaatttaccgcatgatgcgtcccggcgagccg
ccgaccaaagagtctgctgagacgctgtttaacaacctgttcttctctgaggaccgctac
gacctgtcgggcgttggccgcatgaagttcaaccgccgtctgcgccgtgataccgatacc
ggctccggcgtactggatcgtaaagacatccttgatgtgctgcgcgagctgatcagtatt
cgtaacggcttcggtgacgttgacgatatcgatcacctgggtaaccgccgtattcgctgt
gtgggcgaaatggccgagaaccagttccgcgttggcttggtgcgtgtagagcgtgccgtc
aaagagcgtctttccatggcggaaagcgaaggcctgatgccgcaagacttgatcaacgcc
aagcccgttgcggcggcggtaaaagagttcttcggttccagccagctttcgcagtttatg
gatcagaacaacccgctttcggaagtgacccacaagcgtcgtgtgtctgcactcggcccc
ggtggtttgacccgtgagcgcgctggcttcgaagtacgtgacgttcacgccacgcactac
gggcgtctatgcccgatcgaaacgccagaaggcccgaacatcggtctgattaactcgctg
gccacctacagccacactaacagctacggtttccttgaaacgccgtaccgtaaagtggtt
gatcgtcagttgacggacgatatcgtccacctctcggcgatcgaagagggcgactttgtt
atcgcccaggcgtcagcagcggtagatgagtccaacaaactaagtgatgacctagttcag
gttcgtcaccgcggtgaaacgacctttatgcgtcctgagcaagtgacgctaatggacgta
tcgccacgtcaggtcgtctccgtcgcagcggcattgattccgttcctggagcacgatgac
gccaaccgcgccttgatgggttctaacatgcagcgtcaggcggtgccgaccctgcgtgct
gataagccgttggtaggtacgggcatggagcgctttgttgcccgtgactccggcgtctgt
gcggtggccaatcgcggcggcgtgattgattccgtggatgcgcgtcgtgtggtggtacgg
gttaatgaagatgaaattatcggcggtgaagccggtgtggatatctacaacctgaccaag
tacacccgctcgaaccagaacacctgtatgaaccagcgccccatcgtgcggcctggtgac
aacgtggcgcgtggcgatattctcgccgacggcccgtctgtcgacatgggtgacctggcc
cttggccagaacatgcgcatcgcgtttatgccctggaacggttacaacttcgaggactcg
atcctgctttccgagcgggtcgttcaagaggaccgtttcacgacgattcatattcaggaa
ctgacctgtgtgtctcgcgacaccaagttaggctcggaggagattacttccgatatcccg
aacgtgggtgagtctgcgctctccaagctggatgaggcgggcgttgtttacatcggtgct
gaagttggccccggtgacattctggtcggtaaggtgacgccgaaaggtgaaacccagctg
acgccagaagagaagctgttgcgtgccatcttcggtgagaaagcgtctgacgttaaagat
acttccctgcgtgccccgaccggcatgaaaggcacggtcatcgacgttcaggtgtttact
cgtgacggcgttgataaagactctcgcgcactctccattgagcgtacgcagcttgatgaa
gtgcgtaaggatctgcaagagacgtaccggattgctgaagacgccacttttgagcgccta
cagcgcacccttgatggccaagctgtcaatggcggtccgaacctcaaaaagggcgacgtg
ctagacgaggcatacctggatgagctgccgcgccagcagtggttcaaactgcgcatgcag
gatgagtcctacaatgagctgttggctcaggccgacgagcagcttgaaaaccgtcgtaaa
gagatggacgagcgctttgaagataagaagcgcaagctgacccagggcgatgacctcgcg
ccgggcgtgctgaaaatcgttaaagtctacatggctgttaagcgtcgcatccagccaggc
gacaagatggcgggtcgtcacggtaacaaaggtgttatctcggccattatgccgatcgaa
gacatgccgtttgacgagaagggcgagccggtcgacgtggtgctaaacccgctgggcgta
ccgtcgcggatgaacgttggtcagatccttgagacgcacctgggcatggcggcacgtggc
ttgggcgtcaagatcgaagccatgctgcgcgacgcacgcggtcagcaagtcgcggagatt
cgtgacttcctggggcagatctacaatacccagggtacacgtgttgaagatctcgattcc
ctgaccgacgatgagatcatcgctctggcgaagaatcttaagggtggtgtgccgatggcc
acgccggtgtttgacggtgccaaagagcacgaaatcaagcatctgctgaagctggcggac
attcctgagtcgggtcagatggccctattcgatggccgtaccggtgacgcctttgatcgt
ccggttaccgtcggctacatgtacatgctgaagcttaaccacttggtagacgacaagatg
cacgcgcgttctaccggttcttactcgctggttacccagcagcccttgggtggtaaggcg
caattcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagcttacggcgcc
gcatacacgctacaagagatgctcaccgtcaagtcggacgacgtcgaaggccgcaccaag
atgtataaaaacatcgtggatggcgaccacaccatgcaggcaggcatgccggaatccttc
aacgtactggtgaaggaaatccgctcgctgggcatcgatatcgagttagagagctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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