KEGG   Helianthus annuus (common sunflower): 110878660
Entry
110878660         CDS       T05101                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
han  Helianthus annuus (common sunflower)
Pathway
han03018  RNA degradation
han03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:han00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110878660
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110878660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:han03019]
    110878660
   03041 Spliceosome [BR:han03041]
    110878660
Messenger RNA biogenesis [BR:han03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110878660
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110878660
Spliceosome [BR:han03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110878660
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 110878660
NCBI-ProteinID: XP_021982694
Position
9:complement(130096615..130099667)
AA seq 98 aa
MLGGPGLESVVDQYISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVIGELDEELDASLNLSELRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgttgggtgggccaggacttgaatctgtcgttgatcaatacatttcagttatcacgaat
gatggacgcaacatagtgggagtattgaaagggttcgatcaagctacaaatattattctt
gatgaatctcatgaaagagtctattcgaccaaggagggtgttcagcaacttgtgttaggt
ctttacatcataaggggtgataacataagtgttattggggaactagatgaagagcttgat
gcaagcttgaatttatcggaactgagagctcaccctctgaagcctgtcattcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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