KEGG   Halothiobacillus sp. LS2: A9404_07780
Entry
A9404_07780       CDS       T04441                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
haz  Halothiobacillus sp. LS2
Pathway
haz03030  DNA replication
haz03410  Base excision repair
haz03420  Nucleotide excision repair
haz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:haz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A9404_07780 (ligA)
   03410 Base excision repair
    A9404_07780 (ligA)
   03420 Nucleotide excision repair
    A9404_07780 (ligA)
   03430 Mismatch repair
    A9404_07780 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:haz03032]
    A9404_07780 (ligA)
   03400 DNA repair and recombination proteins [BR:haz03400]
    A9404_07780 (ligA)
Enzymes [BR:haz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A9404_07780 (ligA)
DNA replication proteins [BR:haz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A9404_07780 (ligA)
DNA repair and recombination proteins [BR:haz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A9404_07780 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A9404_07780 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     A9404_07780 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A9404_07780 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD HHH PTCB-BRCT RNA_pol_A_CTD FGE-sulfatase AphA_like zf-NADH-PPase
Other DBs
NCBI-ProteinID: ANJ67294
UniProt: A0A191ZHD3
Position
1769962..1772010
AA seq 682 aa
MAAEQDRPLSRMQARIQARLLALRAEIEQHNFRYYVLDDPTVSDAEYDALVRELKAIEAE
HPEWITPDSPSQRVGAPTFVTTFDNVRHRQPMLSLDNVFDAEEWAAFEQRARDRLNTDAP
LVFAAEPKFDGLAINLTYVDGRLIQAATRGDGSVGEDVTPNVRTIRSIPDRLDLPAPSVV
EVRGEIVMSHSAFAALNRAAEAAGDKTFANPRNAAAGSLRQKDPRVTARRQLQFFAYGVG
AAEGIDLPDTQLGLLDWLGGLGFTVSEWRTACTGSAAVLAYHAAMLARRPTLDYDIDGIV
LKINAVQEQQILGFVAKAPRWAVAFKFPAEEATSQVKAVDFQVGRTGALTPVARIEPVFV
GGVTVSNITLHNIDEVTRKDIRIGDYVVVRRAGDVIPEIIKNIPDRRPEDTQAITLPEHC
PVCGSEVIRVEGEAIARCSGGLFCPAQRREAIRHFASRKAMNIDGLGEKWIELLLEHQLI
DHVDDLFHLTREQLLSLPRMGEKSAQNLIDALEQAKNTTLPRFLYALGIREVGEVTAAAL
AQHFPTIDALEQATLDDLQAVPDVGPIVAMHVHTFLRQPHNREVIANLLATGVHWPAPAA
APKEAPLAGRTYVLTGTLSQMTRDEASARLQSLGAKVSGSVSSKTTAVIAGEAAGSKRSK
AEALGVPVLEEADLLALLDAPE
NT seq 2049 nt   +upstreamnt  +downstreamnt
atggcggcagagcaggatcgacccctgtcacgaatgcaggcacgaattcaggcacgactc
ctggccctccgggccgagatagaacaacacaatttccggtattacgtgctcgacgacccg
acggtcagcgatgccgaatacgatgcccttgtccgcgagctgaaagcaatcgaggccgag
cacccggaatggatcacgcccgactcgccctcccagcgtgtcggcgccccgaccttcgtc
actaccttcgacaacgtccggcatcgccaaccgatgctgtcgctggataacgtgttcgac
gccgaggagtgggccgccttcgagcagcgcgcccgcgaccgcctgaatacggatgcgcct
ctcgtctttgcggccgaacccaagttcgatggtctggcgatcaatctcacctatgtcgac
ggccggctgatccaggccgcgacgcgcggcgacggcagcgtcggcgaggacgtcaccccc
aacgtgcgcaccatacgctcgatcccggatcggctggatctacccgcgcccagcgtggtg
gaagttcgcggcgagatcgtgatgtcccattcggccttcgctgccctcaaccgggctgcc
gaagcggccggcgacaagaccttcgccaatccgcgcaatgccgctgccggttccctgcgc
cagaaggatccgcgcgtcacggcccgccggcagctgcaattcttcgcctacggcgtcggt
gcggcggagggcatcgacctgcccgacacccaactgggcctgctggactggctcggcggt
ctgggcttcacggttagcgaatggcgcaccgcctgtaccggcagcgccgctgtgctggcc
taccacgccgccatgctggcgcgccgtccgaccctggactacgacatcgacggcatcgtc
ctcaagatcaacgccgtccaggaacaacagatactcggcttcgtcgccaaggccccgcgc
tgggccgtcgccttcaagtttccggccgaggaagccacgagccaggtaaaggcggtggat
tttcaggtcggccgcaccggcgcgctcacgcccgtcgcccgcatcgagcccgtgttcgtc
ggcggcgtcaccgtctcgaacatcaccctgcacaatatcgacgaggtgacccgcaaggac
atccgcatcggcgactacgtcgtcgtgcggcgcgcgggggacgtgattcccgagatcatc
aagaacatccccgaccggcgcccggaggatacgcaagccatcacgctacccgagcattgc
ccggtctgcggctccgaggtcatccgggtcgagggcgaagccatcgcacgctgcagcggc
ggcctgttctgtcccgcccaacgccgggaagccatccggcatttcgccagccgaaaggcc
atgaacatcgacggcctcggcgagaaatggatcgaactgctgctcgaacaccaactcatc
gaccatgtcgacgacctgttccaccttacccgggaacaactgctcagcctgccgcgcatg
ggcgagaaatcggcccagaacctgatcgatgccctggagcaggctaaaaacaccaccctg
ccgcgttttctctatgcactcggcatccgggaagtcggcgaagtgaccgctgccgcgctg
gcccagcatttcccgaccattgatgccctggaacaggccacgctggacgatcttcaggcc
gtccccgacgtcggccccatcgtggcgatgcacgtccacaccttcctgcgtcaaccacac
aaccgggaagtcatcgccaacctgctcgccaccggggtgcactggccggcacccgccgct
gcgccgaaggaagcgccgctggccggcagaacctacgtgctcaccggcacgctgagccag
atgacccgcgacgaggccagcgcgcgcctgcagtctctgggcgcgaaggtcagcgggtcg
gtctcgagcaaaaccactgccgtcatcgcgggcgaagccgccggcagcaagcgcagcaag
gcggaagcgctgggggtgccggttctcgaagaggccgatctgttggccttgctcgatgcg
ccggaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (32)   

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