KEGG   Hirschia baltica: Hbal_0909
Entry
Hbal_0909         CDS       T00945                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
hba  Hirschia baltica
Pathway
hba03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hba00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hbal_0909
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hba03019]
    Hbal_0909
   03400 DNA repair and recombination proteins [BR:hba03400]
    Hbal_0909
Enzymes [BR:hba01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Hbal_0909
Messenger RNA biogenesis [BR:hba03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Hbal_0909
DNA repair and recombination proteins [BR:hba03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Hbal_0909
SSDB
Motif
Pfam: DEAD HRDC Helicase_C RQC RecQ_Zn_bind
Other DBs
NCBI-ProteinID: ACT58603
UniProt: C6XQJ7
Position
967555..969444
AA seq 629 aa
MSSESAQAKPFYQAETDTLASNMEAAQRVLRQVYGYGEFRGLQADVISHVLAGEDVVAIL
PTGGGKSLCYQIPALVREGVGLVVSPLIALMADQVDALREAGVRAERLDSSMDFEDRMIA
LDKAANGQMDLLYVSPEGLMSNGLRARLQTLDLSLIAVDEAHCVSQWGHDFRPDYRALGE
LKDLFPNVPRIAVTATADPRTRTDIKTQLHLETAAELVDSFDRPNLILHAERKDGKGTDR
VIQLVKAQAGKSGIVYTGSRDGTERIAQALEKAGIPALAYHAGLDAEIREKRQRRFLLED
NLVMCATVAFGMGVDKPDVRFVVHADPPKSIEAYWQEVGRGGRDGEIAEGYCLYSPSDMR
KLVRWAEQSDAVEDVRQVQIRKTRQLFGFLDGMACRRAGVRRYFAEQNVQECGDCDNCKS
PRDEGYDATRWAQMVVSAVLRTGQRYGRGRVVTHLRGDAKDQIDEDMSQLTTYGVGSELG
PVGWRSVIDQLLFDGYLAEDDNDNRPTLYAPDKEMTLALFGGDVTIAMRENPTKIRKREK
TKSSGTNIRDGLSTDQVDLFEDLRDWRRELASDTGVPPYVIFNDKTLREIAIAKPLSKYD
LLRIAGVGEKKAERYVDDVARIVEEAIRG
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgtctagtgagtcggcgcaggccaaacctttctatcaagctgaaacagatacgttagcg
tccaatatggaggctgcgcagcgcgtgctgcgtcaggtttacggctatggcgagtttcgc
ggtttgcaggcggatgtgatatcgcacgtgcttgctggcgaagatgttgtagcgatcctg
ccgacgggtggtgggaagtcactctgttatcaaattcctgcacttgtgcgtgagggtgtt
gggttggtcgtatcgcctttgattgcgctgatggcggatcaggtggatgcgttgcgtgaa
gctggtgtgcgggctgagcggctcgattcttcgatggattttgaagatcgcatgattgcg
ttggataaagcagccaatgggcagatggatttgctttatgtctcgcccgaaggtttgatg
agtaatggtttgcgggcgcgtttgcagacattggatctttcactgattgctgtggatgaa
gcacactgtgtgagccaatgggggcatgacttccggcctgactatcgcgcgctgggggaa
ctaaaagatttattccccaatgtaccgcgcatagctgtgacggcgacagcagacccacgc
acccgcacagatataaagacgcagcttcatttagaaacagctgctgaacttgttgatagt
tttgatcgccctaacttaatcctccatgctgaacgtaaagacggtaaaggcacagatcgc
gttatacagctggtgaaggcacaggcgggtaagtctggcattgtttataccggatcgcgt
gatggtacggagcgcattgcccaagctttagagaaggcgggtattcctgctttggcttat
catgcgggtttggatgcagagatacgcgaaaagcgtcagcgccgttttctgttggaagac
aatcttgtgatgtgtgcgactgtggcatttggcatgggcgtggataagcccgatgtgcgc
tttgtggtgcatgcggacccgccaaaatctatcgaagcctattggcaggaagtggggcgc
ggcgggcgtgatggagagatagcggaaggctattgcctgtattcgccatctgacatgcga
aagctggtgcgctgggcagagcaatcggatgctgtggaagacgtgcgccaagtgcaaatc
cgcaagacgcggcaattatttgggtttctcgatggcatggcatgtcgacgggcaggggtg
cgccgctattttgccgaacagaatgtgcaggaatgtggtgattgcgacaattgcaaaagc
ccacgcgatgaaggctatgacgcgacacgctgggcgcaaatggttgtgtcggctgtttta
cgcacggggcaacgctatggtcgcgggcgtgtggtgacgcatttgcgcggtgatgctaaa
gatcagattgacgaggacatgtcgcagctcaccacatatggcgtgggatcagagcttggc
cctgtggggtggcgatccgtgattgatcaattgttgtttgatgggtatttggcggaagat
gataatgataatcgccccacgctgtatgcgcccgataaagagatgacgctggcgctgttt
ggcggcgatgtgacgattgccatgcgcgaaaacccaaccaaaattcgcaagcgcgagaaa
accaaatccagcggcaccaatatccgcgatggcctcagcacggatcaagttgatctgttt
gaggatttgcgcgattggcgacgcgaattagccagcgatacgggcgtgccgccttatgtt
attttcaacgacaaaaccctgcgcgaaatcgccattgcaaaacccctcagcaaatatgac
cttttgcgcattgccggcgtcggcgagaaaaaagccgaacgctatgtcgatgacgtagcc
cgcatcgtcgaagaggcgatacggggttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (29)   

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