KEGG   Halomonas beimenensis: BEI_2169
Entry
BEI_2169          CDS       T05125                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
hbe  Halomonas beimenensis
Pathway
hbe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hbe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BEI_2169 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hbe03400]
    BEI_2169 (mfd)
Enzymes [BR:hbe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BEI_2169 (mfd)
DNA repair and recombination proteins [BR:hbe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BEI_2169 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter CarD_TRCF_RID Helicase_C MFD_D3 ResIII UB2H AAA_30 AAA_22 ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: ATJ83156
UniProt: A0A291P8B8
Position
2281820..2285269
AA seq 1149 aa
MPTFSPLDPPRPRGLRDTLYWQTPPGSATALALAHLAEDAPLLVITADTAAAQRLEGDLA
FYSRLPVMPFPDWETLPYDSFSPHQDIVSARLRTLRRLQDGEHGIVLVPINTLMQRLAPV
DYIAGRVMTLEVGMTLDREGFRERLSRAGYRAVETVYEPGEYALRGALIDLFPMGSDSPL
RIDLFDDEVDSLRHFDPDTQRSADKVERVELLPAHEYSLSRSAIACFREGFETLFDVDPR
QCPLYVDALKGIPSPGLEQYLPLFFEETATLFDHLAEGTRVALLPGAFDAAEHHWAAIES
RYENLGVDPTRPLLPPHRAFVPVAEVFGAIKRHPRVELTDDADHPHALTPGARPSPVVPI
NARAKHPLAEVEGFLASHAATRVLFVAESRGRREALEETLSPLGLSLPHVDDFTAFLAGD
ARTAITEGAIDAGLWLEAPDLAVISETELFGEVVRQSRRREKVTDDGELAIRHLAELKPG
APVVHQAHGVGRYRGLETLEAGGQAAEFVALEYADGARLYVPVDSLHLISRYAGVDDELA
PLHRLGSEQWDKAKRKAAEKIRDTAAELLDVYARREAKEGFACEAPDTEYARFAASFPFE
ETPDQRAAIEAVVGDMTAPRPMDRVVCGDVGFGKTEVAMRAAFLAVHSGRQVVVLVPTTL
LARQHYENFRDRFADTAVNIELISRFTGGQGQEAARKRIEEGQADIVIGTHKLLSKSMRF
PKMGLLIIDEEHRFGVAQKERLKSLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQRDEAVIKEAILREILRGGQVYFLHNEVKTIETAAETVRGLVPEARVGV
AHGQLPERSLERVMSDFYHKRFNVLVCSTIIETGIDVPSANTIVIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLAPPPRAMTRDAVKRLEAIGQAEDLGAGFTLASHDMEIRGAGELLG
EEQSGQMEALGYSLYMQMLDRAVKAIREGRTPNIEAPLAEGVEIGLNLPALIPDDYLHDV
QQRLVMYKRIASAETEAELKELQVEMIDRFGLLPAPVKTLLRQTRLRQRAERLGIARLEA
GPEKGRVIFAGHTRVDPLLLVEMIQREPSRYRLEGADTLRFEAEMADEETRFRVVEALLE
SLNRKAEAA
NT seq 3450 nt   +upstreamnt  +downstreamnt
atgccgaccttctcgccactcgatccgccacgtccccgggggctgcgcgataccctctac
tggcagacgccgcccggcagcgccaccgccctggccctggcccatctggccgaggacgcc
ccgctgctggtgatcaccgccgacaccgccgccgcgcagcgattggagggcgacctggcc
ttctactcgcgactgccggtcatgccgttccccgactgggagaccctgccctacgacagc
ttctccccgcatcaggacatcgtctccgcccggcttcgcaccctgcgccggctccaggac
ggcgagcacggcatcgtcctggtgccgatcaacaccctgatgcagcgcctggccccggtg
gactacatcgccggccgggtcatgacgctggaagtgggcatgaccctggaccgcgaggga
tttcgcgagcgcctgtcccgggccggctaccgggccgtggaaaccgtctacgaacccggt
gaatacgccctgcgcggcgccctgatcgatctcttccccatgggcagcgactcgcccttg
cgcatcgacctcttcgacgacgaggtcgacagcctgcgtcatttcgatccggacacccag
cgaagcgccgacaaggtcgagcgggtcgagttgctgccggcgcacgagtactcgctgtcg
cgctcggccatcgcctgcttccgcgagggcttcgagacgctgttcgacgtcgacccgcgc
cagtgcccgctgtacgtcgacgccctcaaggggatcccctcccctggcctcgagcagtac
ctgccgctgttcttcgaggagacggccaccctgttcgaccacctggccgagggcacccgg
gtggccctgctgcctggggccttcgacgccgccgagcatcactgggccgcgatcgagagc
cgctatgaaaacctcggcgtcgacccgacgcgaccgctgctgcctccccatcgcgccttc
gtgccggtggccgaggtgttcggcgccatcaagcgccatccgcgggtcgagctcaccgac
gacgccgaccatccccatgccctgacgccgggcgcccgaccatcgccggtggtgccgatc
aacgcccgggccaagcatcccctggccgaggtcgagggcttcctcgcgtcccatgcggcg
acgcgcgtgctgttcgtggccgagtcccggggccgccgcgaggccctggaggagacgctg
tccccgctcggcctgtccctgccccatgtcgacgacttcacggccttcctggccggcgac
gcccgcaccgccatcaccgaaggggctatcgacgccggtctgtggctggaggcccccgac
ctagcggtgatcagcgagaccgagctgttcggcgaggtggtccgccagagccggcgccgg
gagaaggtcaccgacgacggcgagctggccatccgacacctggccgaactcaagcctggg
gcaccggtggtccaccaggcccatggcgtgggccgctatcgcggcctggagaccctcgag
gccggcggccaggccgccgagttcgtcgccctcgaatacgccgacggcgccaggctctac
gtgcccgtggacagcctgcacctgatctcgcgctatgccggcgtcgacgatgagctggcc
cccttgcaccgactgggctccgaacagtgggacaaggccaagcgcaaggccgccgagaag
atccgcgacaccgccgccgaactgctcgacgtctatgcccgccgcgaggccaaggagggc
ttcgcctgcgaggcgccggacaccgaatacgctcgcttcgcggccagcttccccttcgag
gagaccccggaccagcgcgccgccatcgaggcggtggtgggcgacatgaccgccccgagg
cccatggaccgggtggtgtgcggcgacgtcggcttcggcaagaccgaagtggccatgcgg
gccgccttcctggccgtgcattccggccgccaggtggtggtactggtgcccaccaccctg
ctcgcccgccagcactatgagaacttccgtgaccgcttcgccgacaccgccgtgaacatc
gagctgatctcgcgcttcaccggcggccagggacaggaagcggccaggaaacggatcgag
gagggccaggcggacatcgtcatcggcacccacaagctgctctccaagtcgatgcgcttc
ccgaagatggggctgctgatcatcgacgaggaacatcgcttcggggtcgcccagaaggaa
cgtctgaagagcctgcgcgccgaggtggatatcctgacgctcaccgccacgccgattccg
cggaccctgaacatggccatgagcggcatccgcgacctctcgatcatcgccactcccccg
gcccggcgcctctcggtcaagaccttcgtccagcagcgcgacgaggcggtgatcaaagag
gcgatccttcgcgagatcctgcgcggcgggcaggtctacttcctgcacaacgaggtcaag
accatcgagaccgccgccgagacggtgcgcggcctggtgcccgaggcccgggtcggcgtg
gcccacggccagctgccggagcgttccctggagcgggtcatgtcggacttctaccacaag
cgcttcaacgtgctggtctgctcgaccatcatcgagaccggcatcgacgtgcccagcgcc
aataccatcgtcatcgagcgcgccgacaagttcggcctggcccagctgcaccagctgcgc
ggccgggtcggccgcagccaccaccaggcctacgcctacctgctggccccgccgccacgc
gccatgacccgggatgccgtcaagcgcctcgaggccatcggccaggccgaggacctgggc
gccggcttcaccctggccagccacgacatggagatccgcggcgccggggagctgctcggc
gaggagcagagcggccagatggaggccttgggctacagcctctacatgcagatgctcgat
cgcgcggtcaaggcgatccgcgagggcaggacgcccaacatcgaggccccgctggcggag
ggcgtggagatcggcctgaacctgccggcgctgatccccgacgactacctgcacgacgtc
cagcagcggctggtcatgtacaagcgtatcgccagcgccgagaccgaggccgaactcaag
gagctgcaggtggagatgatcgaccgtttcggcctgttaccggccccggtgaagaccctg
ctgcgccagactcggctgcgccagcgtgccgaacgcctgggcatcgcccggctggaggcc
ggccccgagaagggacgggtgatcttcgccggccatacccgggtcgaccccttgctgctg
gtcgagatgatccagcgggaacccagccgctaccgcctggagggggccgacaccctgcgc
ttcgaggccgagatggccgacgaggagacccgcttccgcgtggtggaagcactgctcgag
tcgctcaaccgcaaggccgaggcggcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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