KEGG   Hippocampus comes (tiger tail seahorse): 109513273
Entry
109513273         CDS       T04969                                 
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
  KO
K06236  collagen type I alpha
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq04510  Focal adhesion
hcq04512  ECM-receptor interaction
hcq04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109513273
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109513273
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109513273
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:hcq00536]
    109513273
Glycosaminoglycan binding proteins [BR:hcq00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   109513273
SSDB
Motif
Pfam: Collagen COLFI VWC TILa
Other DBs
NCBI-GeneID: 109513273
NCBI-ProteinID: XP_019721149
Position
Unknown
AA seq 1447 aa
MFSFVDIRLALLLSAAVLVVRGQGEDDRTFGSCTLDGQLYNDKDVWKPEPCQICVCDSGT
VMCDDVICEDSSDCADPIIPEGECCPICPEGPVNPQEGVKGDVGPKGDVGPMGPPGNDGI
PGQPGLPGPPGPPGPPGLGGNFSPQMSYVDHTKSSGGPQMPGPMGPMGPRGPAGPPGSAG
PQGFTGPAGEPGEPGASGPMGARGPAGPPGKNGDDGDAGKAGRPGERGAPGMQGTRGFPG
TPGLPGIKGHRGFNGLDGAKGDAGPAGPKGEAGAHGENGIPGAMGARGLPGERGRPGPAG
PAGARGNDGNAGPAGPPGPTGPAGPAGFPGGAGVKGETGPQGARGAEGAQGARGEPGNPG
PAGAAGPAGAPGTDGVPGAKGATGPAGIAGAPGFPGARGPAGGQGAVGAPGPKGNNGDPG
VAGPKGEPGAKGETGPAGVQGLPGPSGEEGKRGPRGEPGVGGPRGPPGERGAPGARGFPG
ADGGVGGKGAPGERGATGPAGPQGATGESGAPGAPGAPGSKGVTGSPGSTGADGKVGPAG
PPGQDGRSGPAGPAGPRGQPGVMGFPGPKGVAGENGKPGEKGPAGAMGAVGAPGKDGDAG
APGPAGPAGPAGEKGEGGPAGPSGFQGLPGPQGATGETGKPGEQGVAGEVGPAGPSGPRG
DRGFPGERGAPGIGGPNGPRGSPGPAGNDGPKGEPGAPGANGAAGSPGMQGMPGERGAAG
LPGVKGERGETGVKGGEGAPGKDGARGITGPIGPPGPPGSQGEKGEPGPVGAVGPSGPRG
SPGERGEAGPAGPAGFAGPPGADGQPGAKGETGVSGPKGDAGAPGPGGPVGPAGPQGPAG
PPGAKGARGGAGAPGVTGFPGPAGRVGPAGPAGAAGPPGPGGPVGKDGARGARGETGPAG
RPGEPGAVGIAGPPGERGSPGSDGAPGAAGVPGPQGIGGQRGIVGLPGLRGERGFAGLPG
PAGEPGKQGPGGPVGARGPPGPAGPPGLSGAPGEAGREGAQGHDGAPGRDGAAGPKGDRG
ESGIAGPPGPPGAPGAPGAVGPSGKSGDRGEPGPAGPAGPAGPAGARGPAGPAGGKGDRG
EAGEAGERGHKGHRGFTGMQGMPGPAGTSGERGPAGANGPAGPRGPAGSTGSHGKDGMNG
MPGPIGPPGPRGRNGEMGPSGPPGPPGPPGPPGAPGGGFDFISQPIQEKAPDPYRSGHYR
ADDPSVLRDRDMEVDTTLESLTKRIEKLSSPDGTQKSPARMCRDLRMCHPEYQSGTYWVD
PNQGSPLDAVKVHCNMETGETCVYPSQSTVPMKNWYMSRNPRDKKHVWFSESMTGGFQFQ
YGTDGADVEDVSIQMTFMRLMANQASQNITYHCKNSIAYMDSASGNLKKALLLQGSNDVE
IRAEGNSRFTYSVSEDGCTSHTGSWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGVE
VGPVCFL
NT seq 4344 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatattcggttagcgcttttgctcagcgcagctgtgctggtggtg
agaggtcaaggcgaggatgatcgcacatttggcagctgcacactagacggacagttgtac
aacgacaaagatgtgtggaaaccagagccgtgccaaatctgtgtttgcgacagcggcaca
gtgatgtgcgacgacgtcatctgcgaggattcttctgactgcgccgaccccatcatccca
gagggagaatgctgtcccatctgccccgaaggacccgtcaacccccaagagggtgtcaag
ggagacgttggtcctaagggagatgtgggtcccatgggtcctcctggaaatgatggaatc
cccggacagcctggacttcccggcccacctggtccccctggcccccctggccttggcgga
aacttctctcctcaaatgagctacgtggaccacaccaagtccagcggcggcccacaaatg
cccggccccatgggtccaatgggtcctcgtggtcctgccggacctcctggatctgctggt
cctcagggtttcactggtcccgctggagagcccggtgagccaggagcttctggtcccatg
ggtgctcgtggtcccgctggaccccctggaaagaacggagatgatggtgacgctggcaaa
gctggacgccctggtgagcgtggagcccctggcatgcagggtacccgtggattccctgga
acccccggacttcctggcatcaagggacacagaggtttcaatggtttggatggagctaag
ggagacgctggacctgccggacctaagggagaggctggtgcccatggtgagaacggtatc
cccggagctatgggtgctcgtggtcttcctggtgagagaggccgtcccggacctgctggt
cctgctggtgctcgtggtaacgatggcaatgctggccctgctggaccccctggacccact
ggacctgctggacccgctggattccctggcggtgctggtgtgaagggagagactggtccc
caaggagcccgtggagctgagggagcccagggagctcgtggtgagcctggtaacccagga
cccgctggagctgctggacctgctggtgctccaggaactgatggtgtccctggtgccaag
ggtgctactggtcccgctggtattgctggtgctcccggtttccccggtgctcgtggtccc
gctggaggtcagggtgccgtcggtgctcctggtcccaagggtaacaatggtgaccctggc
gttgctggtcccaagggagagcctggtgccaagggagagactggcccagctggagttcag
ggacttcctggaccatctggtgaggaaggcaagagaggaccccgtggagagcctggtgtt
ggtggaccccgtggacctcctggagagcgtggtgcccctggtgcccgtggtttccccgga
gctgatggaggtgttggtggcaagggagcccctggtgagcgtggtgccaccggccctgcc
ggacctcagggagccactggtgagtctggcgctcccggcgcccctggtgcacctggatcc
aagggtgtgactggtagccccggaagcactggtgctgatggcaaagttggacctgctggt
ccccctggacaagatggacgctctggacctgctggccccgctggccccagaggacagcct
ggcgttatgggattccccggacccaagggagttgctggtgagaatggcaagcctggtgag
aaaggacccgctggtgctatgggcgctgtcggtgctcccggcaaagatggcgatgctggt
gctcctggacctgctggccctgctggacctgctggagagaagggagaaggtggtccagct
ggaccttctggattccagggtcttcccggaccccaaggtgctactggtgagactggcaag
cctggtgagcagggtgttgctggtgaggtcggacctgctggcccatctggacctagaggc
gacagaggtttccctggtgagcgtggtgctcctggtatcggaggtcctaatggaccccgt
ggttcccctggccctgctggtaacgatggacctaagggagagcccggtgcccctggtgcc
aatggtgctgcaggaagccccggtatgcagggtatgcccggcgagcgtggagctgctggt
ttgcctggagtcaagggagagagaggtgagactggtgtcaagggaggcgaaggtgccccc
ggcaaagatggcgcccgtggtataaccggccctatcggaccccctggacctcctggttct
cagggtgagaagggtgagcctggccctgttggcgctgttggacccagcggccctcgcggt
tcccctggtgagcgtggagaggctggccctgctggacctgctggatttgccggaccccct
ggtgctgacggtcagcctggtgccaagggagagactggtgtttctggacccaagggagat
gctggtgctcctggacccggtggacctgttggacctgctggcccccagggccctgctggt
cctcctggagcaaagggtgctcgtggtggtgctggagctcctggtgttactggtttccct
ggacctgctggcagagttggacccgctggtcccgctggagctgctggacccccaggaccc
ggaggccccgttggcaaagatggcgcaaggggagctcgtggtgagactggtcccgccggt
cgtcctggtgagcctggtgctgttggaatcgctggacctcctggtgagagaggatcccct
ggttcggatggtgcccctggtgccgctggtgtgcccggaccccaaggtattggtggacag
cgtggtattgtaggtctccctggactgcgtggagagcgtggtttcgctggtctgcctgga
cctgctggtgagcctggaaagcagggacctggcggacccgttggtgcccgtggaccccct
ggacctgctggaccccctggactctctggcgctcccggagaggctggccgtgagggagct
caaggacacgatggtgcccctggtcgcgatggagctgctggccccaagggagaccgtggt
gagtctggtattgctggacccccaggacctcctggtgctcctggtgcccctggagctgtt
ggcccctctggcaaatctggcgatcgtggagagcccggtcccgctggccccgctggtcct
gctggccctgctggtgcccgtggtcctgctggacccgctggaggtaagggagacagagga
gaggctggtgaggctggagagagaggccacaaaggacacagaggattcactggcatgcag
ggtatgcctggacctgctggaacctctggagagagaggacccgctggagccaatggacct
gctggaccaagaggacctgctggatctaccggctcccatggtaaggatggcatgaacggt
atgcctggacctattggacctcccggccctcgtggtcgcaatggagagatgggaccttct
ggtcctcctggacctcccggacctcccggaccccctggtgctcccggtggtggattcgac
ttcatcagccagcctattcaggagaaggctcccgatccctaccgctctggccattaccgc
gctgacgaccccagtgttctccgcgatcgtgacatggaggtcgacaccactctggagtct
ctgaccaagagaatcgagaagctcagcagccccgacggtactcagaagagccccgcccgt
atgtgccgtgatctgaggatgtgccaccctgagtaccagagcggcacctactgggtggac
cccaaccagggctcccctctggacgccgtcaaggtccactgcaacatggagactggtgag
acttgcgtctaccccagccaatccactgtgcccatgaagaactggtacatgagcaggaac
cccagagacaagaagcacgtctggttcagcgagtccatgaccggtggattccagttccag
tatggcaccgatggagctgatgttgaggatgtcagcatccagatgaccttcatgcgtctg
atggccaaccaggcctctcagaacatcacataccactgcaagaacagcatcgcctacatg
gactcagcctctggcaatctcaagaaggccttgctgctccagggctccaacgacgtggag
atcagagccgagggtaacagccgcttcacatacagcgtcagcgaggacggctgcacgtca
cacactggctcatggggcaagacagtcatcgactacaagacatcgaaaacatcccgcctg
ccaatcattgacattgctcccatggatgttggtgcccctgatcaggaatttggcgtcgaa
gttggccctgtttgcttcttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (112)   
   KEGG ORTHOLOGY (1)   
   RefGene (108)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (128)   

Download RDF
DBGET integrated database retrieval system