KEGG   Hippocampus comes (tiger tail seahorse): 109521221
Entry
109521221         CDS       T04969                                 
Symbol
vps4b
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03250  Viral life cycle - HIV-1
hcq04144  Endocytosis
hcq04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    109521221 (vps4b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    109521221 (vps4b)
  09143 Cell growth and death
   04217 Necroptosis
    109521221 (vps4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hcq04131]
    109521221 (vps4b)
   03400 DNA repair and recombination proteins [BR:hcq03400]
    109521221 (vps4b)
Membrane trafficking [BR:hcq04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    109521221 (vps4b)
DNA repair and recombination proteins [BR:hcq03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    109521221 (vps4b)
SSDB
Motif
Pfam: MIT AAA Vps4_C AAA_lid_3 AAA_16 AAA_14 TIP49 AAA_5 RuvB_N AAA_22 AAA_25 DUF815 AAA_18 IstB_IS21 AAA_2 AAA_17 nSTAND3 AAA_33 RNA_helicase AAA_24 AAA_7 Mg_chelatase PhoH Parvo_NS1 bpMoxR DUF5906 AAA_30 AAA_28 Tae4 Torsin NRBF2_MIT YtxH
Other DBs
NCBI-GeneID: 109521221
NCBI-ProteinID: XP_019734479
Position
Unknown
AA seq 506 aa
MEPTNLQKAIAVAQKAAQEDQAGNYEEAIRSYKHAAKYFLHILNREPQGKDGNQKIREKC
KEYLDRAEELHEYLEYKEKAIDLASKAAQEDKAQNYEEALRMYQAAVQYFLHVVKYEAQG
EKAKQSIRAKCAEYLDRAEKLKEYLQKKEKAPPAKPVKESSDKGNDSDDADDPEKKKLQN
QLSGAIVMEKPNIKWDDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGT
GKSYLAKAVATEANNSTFLSVSSSDLVSKWLGESEKLVKNLFALARENKPSIIFIDEIDS
LCGSRSENESEAARRIKTEFLVQMQGVGNDNDGVLVLGATNIPWTLDSAIRRRFEKRIYI
PLPEEHARSFMFKLHLGSTPNSLTDSDFVTLGKKTDGYSGADISIIVRDALMQPVRKVQA
ATHFKRVNGPSRADPLIIVHDLLTPCSPGDPNAIEMTWIDVPGEKLLEPVVCMSDMLRSL
SNTKPTVNEQDLHKLKKFTEDFGQEG
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggagcccaccaatctgcagaaagccatcgcagtggcgcagaaggccgcgcaagaagac
caggcggggaactatgaagaggccattcgctcctataaacacgctgccaagtactttctc
cacattttaaatcgtgaaccacagggtaaagatggcaatcagaaaatcagagaaaaatgt
aaggagtacctggatagagcggaagaactacacgagtacctagagtataaagagaaagcc
attgatcttgccagcaaggcggctcaggaggataaagctcagaattatgaggaggctctg
cggatgtaccaggcagctgtacagtacttcctccatgtggtcaaatatgaagctcaaggt
gaaaaagcgaaacagagcatccgcgcaaaatgtgccgaatatttggatcgggcagagaag
ttgaaggagtatctccaaaagaaagagaaagctccacctgctaaacctgtcaaagagtcg
agtgacaaagggaatgatagcgatgacgctgatgatccagagaagaagaagttgcagaat
caactctcgggtgcaattgttatggaaaagccaaacatcaagtgggatgatgttgccggc
ttagagggcgccaaggaagccctgaaagaagctgtgattctccccattaaattccctcat
ctatttacaggcaagagaacaccatggaggggcatcctgctctttggacctccgggtaca
ggaaagtcttaccttgcaaaagctgtcgccacagaggccaacaactcgaccttcctgtct
gtctcctcgtctgatcttgtttccaaatggttgggagaaagtgagaagttagttaagaat
ctgtttgccctcgcgagagaaaacaagccctccattatcttcattgatgagatcgactcc
ctctgcggctccaggagcgagaacgagagcgaggcggcgcgacgtatcaagacagagttc
ctggtgcagatgcaaggtgttggaaatgacaatgacggagtgctggtactcggggcgaca
aacattccgtggaccctagactctgccatcagaagaagatttgagaagaggatctatatt
ccactgccagaagagcacgctcgcagcttcatgttcaagctccacctgggctccaccccc
aacagtctgaccgactctgattttgtcacactgggcaagaaaacagacggctactcaggc
gcggatatcagtatcatcgtgagagatgcgctcatgcagcccgtccgaaaggtccaggcg
gcaacccactttaaaagggtgaatggaccatcgagagcggaccccctaataattgtacac
gatctcttgacgccttgctcgcccggcgatcccaacgcaattgagatgacatggatcgac
gtccccggagagaagcttctggaacctgtagtttgcatgtctgacatgctgaggtctctg
tccaacaccaagcccaccgtcaatgaacaggatctccacaaactgaaaaaattcacagag
gactttggacaggaaggctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (32)   
   Pfam (32)   
All databases (78)   

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