KEGG   Hippocampus comes (tiger tail seahorse): 109527674
Entry
109527674         CDS       T04969                                 
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
  KO
K06236  collagen type I alpha
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq04510  Focal adhesion
hcq04512  ECM-receptor interaction
hcq04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109527674 (col1a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109527674 (col1a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109527674 (col1a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:hcq00536]
    109527674 (col1a2)
Glycosaminoglycan binding proteins [BR:hcq00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   109527674 (col1a2)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 109527674
NCBI-ProteinID: XP_019745274
Position
Unknown
AA seq 1349 aa
MLSFVDTRILLLLAVTSYLATCQFLGPRGDKGPRGDRGPQGPDGKDGKPGLPGPVGPPGP
PGLGGNFAAQYSKPPDPVSPMGMMGNRGPPGPPGPPGPQGHTGHPGEPGEPGQTGPVGPR
GPPGPPGKSGEDGNNGRPGKPGDRGAPGPQGARGFPGTPGLPGMKGHRGYNGLDGRKGEP
GAAGVKGEAGAHGAAGRPGLVGPRGLAGERGRAGPAGPVGARGADGNTGPSGAAGPAGAA
GAPGFPGGPGPKGEVGPVGATGPSGPQGARGEPGPNGAVGPVGPVGNPGANGLNGAKGAT
GAAGVAGAPGFPGPRGGPGPQGPQGAAGPRGLAGDPGVQGVKGDVGAKGEPGSAGPQGAP
GPHGEEGKRGPTGEIGAAGPAGSRGSRGAPGSRGMPGAEGRVGPLGMPGARGATGSAGAR
GAPGDAGRAGEPGPAGARGLHGSPGSSGPQGKEGPSGPAGQDGRTGPPGPTGPRGQPGNI
GFPGPKGPAGEPGKPGEKGATGATGLRGPPGPDGNNGATGPMGVSGGAGEKGEQGPAGSP
GFQGLPGPAGAAGEVGKPGDRGIPGDQGVAGPAGVKGERGNPGAAGSAGPQGPMGARGAT
GAPGADGSKGEPGVVGVVGAPGHQGASGMPGERGAAGPAGVKGEKGELGHKGPDGNPGRD
GARGLPGAGGPPGPTGANGDKGESGSFGPAGPSGVRGAPGERGEVGPAGAPGFAGPPGAN
GQTGARGERGPAGGKGDVGPAGPAGPAGQSGPAGPSGPAGPTGARGDNGPQGLTGFPGAA
GRIGPAGPAGIVGPAGPAGPAGKDGPRGMRGDVGPAGPAGEQGMVGPSGPAGDKGPSGES
GPAGAPGAPGVSGPLGLQGFVGLPGARGDRGSPGGPGAVGEPGRLGPAGPAGARGPAGNI
GMPGMTGPQGEAGREGNTGNDGPPGRPGAAGVKGDRGDPGPAGVLGIAGAPGPAGPSGAV
GRPGNRGDSGFTGPSGPAGAAGARGAAGPAGVRGEKGVGGDKGEMGMKGLRGHPGLQGMP
GPAGAPGDTGPAGAHGPAGPRGPAGPHGPPGKDGRAGAHGTIGAPGARGAPGHIGPVGPP
GPPGLPGPPGAAGGSYDLSGYDEYRADQPAMRAKDYEVDATIKSLNTQIENLLTPEGSRK
NPARTCRDIKLGHPEWTSGFYWIDPNQGCINDAIRVFCDFATRETCIHAQPESIAKKNWF
RSTENKKHVWFGETINGGTEFTYNDETISSQSMATQLAFMRLLSNQASQNITYHCRNSVA
YMDAESGSLSKAVVLAGSNDVELRAEGNSRFTFSVVEDGCTRHTGEWSKTVIEYRTNKPS
RLPILDIAPMDIGGADQEFGLDIGPVCFK
NT seq 4050 nt   +upstreamnt  +downstreamnt
atgctcagctttgtggatacccggattctgttgctgcttgcagtaacttcatacctagca
acatgtcaattcttgggcccccgaggagacaaaggacctcgaggtgacaggggtccccag
ggacctgatggaaaagatggaaaacccggacttcccggccctgttggcccccctggaccc
cctggactcggtggaaactttgctgctcagtactctaagcctcccgatccagtttcaccc
atgggtatgatgggcaacagaggacctcccggaccccctggaccccctggacctcaggga
cacaccggacaccctggtgagcccggcgagcctggacagactggtcccgttggtccccgt
ggcccacccggacctcctggcaaatctggagaggacggtaacaacggcagacctggcaag
cccggagacagaggtgcccccggccctcagggtgctcgtggattccccggaacccctgga
cttcccggaatgaagggacacagaggttacaatggcttggatggacgcaagggagagcct
ggtgccgccggagtcaagggtgaggctggcgcacacggagctgctggaagacccggactt
gttggacctcgcggtctggctggcgagagaggtcgcgccggccctgctggccctgttggt
gctcgtggtgctgatggcaacactggaccatctggtgctgctggacccgctggtgctgct
ggtgccccaggtttccccggtggccctggacccaagggagaggttggacccgttggtgct
accggtccctctggacctcagggagctagaggagagcccggtcccaatggagccgttggc
cccgttggtcccgttggtaaccctggtgctaacggcctgaacggagccaagggagccact
ggtgctgccggtgttgctggagctcctggattccccggacccagaggaggacctggacct
cagggacctcagggtgccgctggtcccagaggcctggctggagatcccggtgttcagggt
gtgaagggagatgttggtgccaagggtgagcctggtagcgctggacctcaaggagccccc
ggacctcacggtgaggagggcaaacgaggacccactggcgagattggagccgctggcccc
gctggtagccgtggatccagaggcgctcccggaagccgtggaatgcccggtgctgaggga
agagttggcccacttggtatgcctggtgctcgtggagccaccggctccgctggagctcgt
ggagcccctggagatgctggccgtgctggcgagcctggtcccgctggtgccaggggtctc
cacggaagccccggaagctctggaccccaaggaaaggagggaccttctggtcctgctgga
caagatggccgcaccggtcctcccggcccaactggacctagaggccagcctggaaacatt
ggcttccctggacccaagggacccgctggtgagcctggcaaacccggagagaagggagct
actggagccactggtctgagaggacctcctggccccgatggtaacaatggcgccactggc
cccatgggagtttctggcggtgctggtgagaagggagagcagggacctgctggatctcct
ggtttccagggtctgcctggacccgctggtgctgctggagaggttggcaagcccggagac
agaggtatcccaggagaccagggagtcgccggacctgctggtgtcaagggcgagcgcggt
aaccccggtgctgccggatctgccggacctcagggacctatgggagcccgcggagctact
ggagctcctggtgctgatggttcaaagggagagcctggcgttgtcggagttgtcggtgct
cctggacaccaaggagctagcggcatgcccggagagcgtggagctgctggccccgccgga
gtcaagggagagaagggagagcttggacacaaaggacccgacggcaaccctggaagagat
ggtgcccgtggtctccccggagctggtggcccccctggtcccacaggagccaatggtgac
aagggtgagagtggatctttcggacccgctggaccttctggagtccgtggtgcccctggt
gagcgtggagaggttggacccgctggagcccctggattcgctggacctcctggcgctaat
ggacagaccggagcaagaggagagcgtggacctgccggaggaaagggagatgttggcccc
gccggccctgctggacccgctggacagtctggacctgctggtccttctggccctgctgga
cctactggcgcccgtggagacaacggacctcagggtctgactggtttccctggagctgct
ggcagaattggccccgctggacctgctggtattgtcggacccgctggccctgctggtccc
gctggtaaagatggtccccgtggtatgcgtggagacgttggtcccgctggccccgctgga
gagcagggtatggttggaccttctggccccgctggagataagggaccttctggagagtct
ggacctgctggtgctcctggtgctcctggagtttctggacctcttggtcttcaaggattt
gttggtcttcctggcgctagaggcgatcgtggtagccccggtggtcccggtgctgtcgga
gagcccggtagacttggacctgctggtcccgctggtgcccgcggccccgctggcaacatt
ggtatgcctggtatgaccggacctcaaggagaagctggacgtgagggtaacactggtaac
gatggacctcctggtcgtcctggtgctgctggagtcaagggagaccgtggtgaccccggt
cccgctggtgttttgggaattgctggtgcccccggacctgctggccccagcggagctgtt
ggaagacctggaaaccgtggagactctggctttaccggaccttctggacccgccggagcc
gctggagctagaggtgccgctggacccgctggagtccgtggcgagaagggagttggtgga
gacaagggagagatgggaatgaagggtcttcgtggacaccctggtctccagggaatgcca
ggacctgctggtgcccctggtgacaccggacctgctggtgctcatggacctgctggaccc
agaggtcccgccggaccccacggacctcctggtaaggatggtagagctggtgcccatggt
actattggtgctcccggtgctcgtggagcccctggacacatcggccctgttggtccccct
ggacctcccggtctgcctggacctcccggcgctgctggtggtagctacgatctgtctgga
tacgatgagtacagagctgaccagcccgccatgagagccaaggattacgaagttgacgcc
accatcaagtccctcaacactcagattgagaacctgctcacccctgagggatccaggaag
aaccctgcccgcacatgccgcgacatcaagctcggccaccccgaatggaccagcggattc
tactggatcgaccccaaccagggttgcatcaatgacgccatcagggtcttctgcgacttc
gccacccgcgagacttgcatccatgcccaacccgagagcattgccaagaagaactggttc
agaagcacagagaacaagaagcacgtctggtttggagagaccatcaatggcggaactgag
ttcacctacaatgacgagaccatcagctctcagagcatggccacccagctggccttcatg
cgcctgctgtccaaccaggctagccagaacatcacctaccactgcaggaacagcgttgcc
tacatggatgctgagagcggcagcctgagcaaggctgtggtgcttgccggctccaacgat
gtggagctgagggctgagggcaacagccgtttcaccttctctgtggtggaggacggttgc
actagacacactggtgagtggagcaagacagtgattgagtacagaacaaataaaccatct
cgcctgcccatcctcgacattgcacctatggacattggtggagctgatcaggagtttggt
ttggacattggcccagtctgtttcaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (120)   
   KEGG ORTHOLOGY (1)   
   RefGene (116)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (2)   
   Pfam (2)   
All databases (142)   

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