KEGG   Hyphomicrobium denitrificans ATCC 51888: Hden_1689
Entry
Hden_1689         CDS       T01265                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
hdn  Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn02024  Quorum sensing
hdn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hdn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hden_1689
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Hden_1689
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hdn03019]
    Hden_1689
   03036 Chromosome and associated proteins [BR:hdn03036]
    Hden_1689
Messenger RNA biogenesis [BR:hdn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Hden_1689
Chromosome and associated proteins [BR:hdn03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Hden_1689
SSDB
Motif
Pfam: Hfq
Other DBs
NCBI-ProteinID: ADJ23496
UniProt: D8JYP4
Position
1722854..1723102
AA seq 82 aa
MAAEKTQNLQDTFLNYVRKNKTPLTIFLINGVKLQGIVSWFDNFCVLLRRDGHSQLVYKH
AISTIMPGGPVNLNDQDGEGTG
NT seq 249 nt   +upstreamnt  +downstreamnt
atggcggctgaaaaaactcagaatttacaagacacctttcttaattatgttcgtaaaaac
aaaactccgctgacgatcttcctcatcaatggcgtcaagctgcagggcatcgtcagctgg
ttcgataatttctgcgttctgcttcggcgcgacgggcactcgcagctcgtttacaagcat
gccatttcgacgatcatgccgggcggtccggtcaatctcaacgatcaggacggcgaagga
actggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system