KEGG   Hyphomicrobium denitrificans 1NES1: HYPDE_28948
Entry
HYPDE_28948       CDS       T02646                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
hdt  Hyphomicrobium denitrificans 1NES1
Pathway
hdt03030  DNA replication
hdt03430  Mismatch repair
hdt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hdt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HYPDE_28948 (dnaE)
   03430 Mismatch repair
    HYPDE_28948 (dnaE)
   03440 Homologous recombination
    HYPDE_28948 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hdt03032]
    HYPDE_28948 (dnaE)
   03400 DNA repair and recombination proteins [BR:hdt03400]
    HYPDE_28948 (dnaE)
Enzymes [BR:hdt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HYPDE_28948 (dnaE)
DNA replication proteins [BR:hdt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HYPDE_28948 (dnaE)
DNA repair and recombination proteins [BR:hdt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HYPDE_28948 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon T2SSK
Other DBs
NCBI-ProteinID: AGK57468
UniProt: N0B3B2
Position
1254886..1258431
AA seq 1181 aa
MEQIRSPAKAPQFVHLKVHSAYSLLEGALPIAKLAKLADAMQFPALGLTDTNNFFGALEF
SEKLWAAGVQPIVGGSLDVDFGDNRDAQPSALRALSNEPRSKPAGKIALLAMTADGVANL
MRLSKALYFEAASDEPPHVKIARIEEFSDGIIALTGGPLGPIDSALRDGQHDLAAERIKT
LEKIFGNRLYVEVQRHGLPEEADFEPVLLDLAYERRIPIVATNECYFAQRSDYEAHDVLL
CIADGRYVVEDNRRRASPEHYLKSEAEMLALFADLPEALANTVEIAMRCTARAEGRKPIL
PRFVKADDSLSEIENFRLEAAELKKQAKEGLARRLKAHGAAPGFTVDDYEKRLAYEIDVI
TQMKFPGYFLIVADFIKWSKANGVPVGPGRGSGAGSLVAYALTITDLDPLRFGLLFERFL
NPERISMPDFDVDFCQEKRDRVIHYVQQKYGDDRVAQIITHGKLQARAVLRDVGRVLQMP
YGQVDRLCKLVPNNPANPVTLKEAIEGEPKLQEERDREPIVARLLEIAQKLEGLYRHAST
HAAGMVIGDRPLEELVPLYRDPKSHFPITQYNWKMVEAAGLVKFDFLGLKTLTVLEKAVD
LIKQVRGITVDLPSLPLDDKATYDMLAKADTAGVFQLESTGMRESLKRLKPDRFEDIIAM
VALYRPGPMDNIPTYINRKHGEEPVDYLHDMLEGILKETYGVIIYQEQVIQIAQVMGGYT
LGQADMLRRAMGKKDKVEMAKQQARFVEGAVAKGVKKEEANYIFELVDKFAGYGFNKSHA
AAYALVSYHTAYLKANFREEFFAASMTLDMGNTDKLAMFASEARKSGIQMLPPCVNQSAV
DFGVEPAKDGGKHGAIRYSLAALKNIGAGAVETIVNERNGAGAFKSLADFAARVDAKALN
KRAIETLAKGGAFDALNNDRALVAANADTILAEAHRRTENEAQGMTDLFGSGGKSAELVL
RSAEGWTPMERLAAEFEAIGFYLSGHPLDQYDRVLKKLGVRKFTEFDELTQRGATAGRLA
GVVIAARERRSQKGNKFAFASFSDATGQFEAVIFSDTLAVCRELLEPGTPVIVSVEAERD
GDTLKMRVQSIEALDKAAAGVPRNLRIVLDHRRCTGPNGERLAEVSSRLKPAQRGGEVRI
VLPLFERGCEMELLLPGRYDVSPQEAGRIASLAVVAEIIEA
NT seq 3546 nt   +upstreamnt  +downstreamnt
atggaacagattcggtcgcctgccaaagctccccaattcgtgcacctaaaggtacactcg
gcatattcgctgcttgaaggcgcgctgccgatcgcgaagctcgcaaagctggcagacgcg
atgcagttcccggcactcgggctgaccgacaccaacaatttcttcggcgcgctcgaattc
tccgaaaaactttgggcagcgggcgtgcagccgatcgtcggcggatcgctggatgtcgat
ttcggcgacaatcgcgatgcgcagccctcggcactgcgagcgctgagcaatgagccgcgc
agcaagcctgctggcaagatcgcacttctggcgatgacggccgacggcgttgccaatctg
atgcggctttcgaaagcgctctatttcgaagctgcttcggatgagcccccgcatgtcaag
atcgcgcgcatcgaagaattttcggacggcatcattgcgttgacgggcgggccactgggg
ccgatcgattccgcgcttcgcgacggccagcacgatctcgccgccgagcggatcaagacg
cttgaaaagattttcggcaatcggctttacgttgaagtgcagcggcatgggttgccagag
gaagccgacttcgagccggttcttctcgatcttgcgtatgagcgtcgtattccgatcgtc
gcaacgaacgaatgttattttgcacagcgctccgactacgaggcgcatgacgttctgctg
tgcatcgcggacggccgctatgtcgtcgaggacaatcgccgccgcgcgagccccgagcac
tatctcaaaagcgaagcggagatgctggcgcttttcgcggatttgcccgaggcgcttgcc
aataccgtcgagatcgcgatgcgctgcacggcgcgtgccgagggacgcaagccgatccta
ccgcgcttcgtcaaagccgacgacagtctgagcgaaatcgagaacttccggctcgaagcg
gccgaactcaagaagcaggcgaaggaaggtctcgcgcggcgcctgaaggcgcacggtgcg
gctccgggcttcacggtcgacgattacgagaagcggctcgcctacgagatcgacgtcatc
acgcagatgaagtttcccggctactttctgatcgtcgcagacttcatcaagtggtcgaaa
gccaacggcgtgccggtcgggcccggacgcggctcgggtgccggctcgctcgtcgcgtac
gcgctgacgattaccgatctcgatcccctgcggttcgggctactgttcgagcgtttcctc
aatcctgagcgtatttcgatgccggacttcgacgtcgacttctgccaggagaagcgcgac
cgcgtcatccattacgttcagcagaaatacggcgacgatcgcgtcgcgcagatcatcacg
cacggaaagctgcaggcacgcgccgtgctgcgcgacgtcgggcgcgtgctgcagatgccc
tatggtcaggtcgaccgtctctgcaaactggtgccgaacaatccggccaatcctgtcacg
ctgaaagaggcgatcgaaggcgaaccgaagctgcaggaagagcgcgaccgcgagccgatc
gtcgcgcgtcttctcgaaatcgcgcaaaagctcgaagggctttatcgccatgcctcgacg
cacgccgcaggcatggtgatcggcgacaggccgctggaagagctggtgccgctctatcgt
gatccgaaatcgcacttcccgattacgcaatacaactggaagatggtcgaggcggccggc
ctcgtgaagttcgactttctcggcctcaagacgctgaccgtacttgagaaggccgtcgat
ctgatcaagcaggtcagaggtatcacggtcgatctgccgagcctgccgctcgacgataaa
gcgacctacgacatgctggcgaaggccgatacggcgggcgtcttccagcttgaaagtacg
ggcatgcgcgaaagcctgaagcggctgaagcccgaccgcttcgaggacatcatcgccatg
gtcgcgctctatcggccgggccctatggacaacatcccgacctacatcaaccgcaagcat
ggcgaggagcccgtcgattacctgcacgacatgcttgaaggcattctgaaggaaacctac
ggcgtcatcatctaccaggagcaggtcatccagatcgcgcaggtgatgggtggctacacg
ctcggccaggccgatatgctacgccgcgcgatgggtaaaaaagacaaggtggaaatggcg
aagcagcaggcgcgcttcgtcgaaggcgctgtcgccaaaggcgtgaagaaggaagaggcc
aactatatcttcgaacttgtcgataaattcgcgggctatggcttcaacaaatcgcacgcg
gcggcttacgcgctcgtcagctaccatacggcctatttgaaggctaacttccgcgaagaa
ttttttgcggcctcaatgacgctcgatatgggcaataccgacaagctcgcaatgttcgca
tcggaagcccgcaaatccggaattcaaatgctgccgccgtgcgtcaatcaatcggcggtc
gatttcggtgtcgagccggcaaaggacggcggcaagcacggtgctattcgttattcgctt
gccgcattgaagaatatcggcgccggcgctgtcgaaaccatcgtcaacgagcgaaacggt
gctggtgctttcaaatcgcttgccgatttcgctgcccgcgtcgatgccaaggcgctgaat
aagcgggccatcgaaacgcttgcaaagggcggcgcattcgacgccctgaacaatgaccgc
gcccttgttgcggccaacgccgatacgatcctcgcagaagctcaccgacgcacggagaat
gaggcccaggggatgaccgatctctttggttccggcggcaaatcggcggagcttgtcctg
cgctctgcagaaggctggacgccgatggagcgcttggctgccgaattcgaagccatcgga
ttttatctgtcgggtcatccgctcgatcaatatgaccgcgttctgaaaaagctgggcgtc
agaaaattcaccgaattcgatgaactcacgcaacgcggcgcgacggccgggcgtctcgcc
ggagtcgttatcgccgcgcgcgagcggcgttcgcagaaaggcaacaagttcgccttcgca
tcattctcggatgcgacaggtcaattcgaggccgtgattttttcagatacgctggcagtc
tgccgcgaacttcttgagcccggcacgcccgtcatcgtctcggtcgaggcggagcgcgac
ggcgatacgctgaagatgcgcgtccaatccatcgaggcgctcgacaaagctgccgccggc
gtgccgcgaaatttgcggattgttctcgatcatcgccgctgtactggaccaaacggcgag
cggcttgcagaagtgagcagccgtctgaagccggctcagcgcggcggagaagtgcgtatc
gtgctcccgctattcgagcgtggctgcgaaatggagttgctactgccgggacgatatgac
gtgtctccacaggaggcggggcgaattgcatcgctcgcagttgtggcggaaatcatcgaa
gcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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