KEGG   Hyphomicrobium denitrificans 1NES1: HYPDE_36563
Entry
HYPDE_36563       CDS       T02646                                 
Name
(GenBank) RNA-binding S4 domain-containing protein
  KO
K06178  23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Organism
hdt  Hyphomicrobium denitrificans 1NES1
Brite
KEGG Orthology (KO) [BR:hdt00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:hdt03009]
    HYPDE_36563
Enzymes [BR:hdt01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.22  23S rRNA pseudouridine2605 synthase
     HYPDE_36563
Ribosome biogenesis [BR:hdt03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    HYPDE_36563
SSDB
Motif
Pfam: PseudoU_synth_2 S4 S4_2 AcMNPV_AC11 SCGB3A
Other DBs
NCBI-ProteinID: AGK58984
UniProt: N0B607
Position
2768248..2769156
AA seq 302 aa
MASRAGRCHKLAFFAQIEITEMPKPIHSTAAEPRDGPMRIAKAMARAGLCSRREAERWIA
DGRVSVNGKLLKTPACEVGPGDKVIVDGKPLPAAGTPQLWRYHKPKGVVTTHSDPQGRPT
VFEKLPPEMPRVISVGRLDFNTEGLLLLTNDGALARHLELPANGWVRRYRVRAKGRVTPV
DLAKLKDGVEIDGVRYGPVEAAVDSVQGANSWLSISIREGKNREVRNVLAHLGLVVNRLI
RVSFGPFQLLDLGPGAVEAVRRRVLVAQLGPKAAASLGLSESQAERKERHARGKAASGSG
DA
NT seq 909 nt   +upstreamnt  +downstreamnt
atggcttcgcgggccggtcgatgtcataagctcgcgttcttcgctcaaatcgaaatcacc
gagatgcccaaacccatacactccactgctgccgagccgcgcgacggccccatgcgcatc
gccaaggcgatggcgcgcgccgggctatgctcacgccgcgaggccgaacgttggatcgcc
gacggccgcgtcagcgtcaacggcaagctgctcaagacgccggcatgcgaggtgggccct
ggcgacaaagtcatcgtcgacggcaagccgctgccggcagcaggaacgccgcagctctgg
cgctatcacaagccgaagggcgtcgtcaccacccattcggacccacaggggcgtccgacc
gtcttcgaaaagctgccgcccgagatgccacgcgtgatttccgtcggccgtctcgacttc
aataccgaaggactgttgctgctgacaaacgacggtgctttggcgcggcatctggagctt
cccgcgaacggctgggtacggcgctaccgggtccgcgccaagggccgtgtcacgcccgtc
gatctcgccaagctcaaggacggcgtcgagatcgacggagttcgctacggaccggtcgaa
gctgcggtcgacagcgtacagggtgcaaattcgtggctctcgatctcgatccgcgaaggc
aagaaccgcgaggtgcgcaacgtgctcgcacacctcgggcttgtcgtgaaccgtctgatc
cgtgtttcgttcggaccgttccagctcctcgacctcgggcctggggccgtcgaagccgtg
cgccgccgcgtgctcgtcgcgcaactcgggccaaaggccgccgcgagccttggactttcc
gaaagccaagccgagcgcaaagaacgccacgcgcgcggcaaagcggcgagcgggagcggc
gacgcatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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