KEGG   Helicobacter pylori SNT49: HPSNT_05290
Entry
HPSNT_05290       CDS       T01916                                 
Name
(GenBank) primosome assembly protein PriA
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
hen  Helicobacter pylori SNT49
Pathway
hen03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hen00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    HPSNT_05290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hen03400]
    HPSNT_05290
Enzymes [BR:hen01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HPSNT_05290
DNA repair and recombination proteins [BR:hen03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     HPSNT_05290
SSDB
Motif
Pfam: DEAD ResIII PriA_C Helicase_C PriA_CRR PriA_3primeBD AAA_19 AAA_22 ADDB_N PhoH nSTAND3 AAA_7 zinc-ribbons_6 CobU AAA_30 Glycos_transf_2 zf-CHY
Other DBs
NCBI-ProteinID: AEN17195
UniProt: G2MC88
Position
complement(1086107..1087966)
AA seq 619 aa
MFYHLIAPLKNKTPPLTYFSKERHQKGALVNIHLRNKTLLGVVLEEVSKPPFECLESEKT
PYFLLPFQIELALFIAQYYSANLSSVLSLFTPFKECDLVGLEKIEPALNVLSQMQTNALK
ELQKHSASLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIALTPQMQQRLKRVFKEN
LGLWHSKLSQNQKKQFLEKLYSQEIKLVVGTRSALFLPLKELGLIIVDEEHDFSYKSHQS
PMYNARDLCLYLSHKFPIQVVLGSATPSLNSYKRFKDKALVRLKGRYTPTQKNIIFEKTE
RFITPKLLEALKQVIDKNEQAIIFVPTRANFKTLLCQNCYKSVQCPFCSVNMSLHLKTNK
LMCHYCHFSSPIPKICNECQSEVLVGKRIGTMQVLNELEGLLKGAKIAVLDKDHTSTPKK
LHNILNDFNAQKTNILIGTQMISKGHDYAKVSLAVVLGIDNIIKSNSYRALEEGVSLLYQ
IAGRSARQISGQVFIQSTETDLLENFLEDYEDFLQYELQERCELYPPFSRLCLLEFKHKN
EEKAQQLSLKASQTLSSCLEKGVTLSSFKAPIEKIASSYRYLILLRSKDPLSLIKSVHAF
LKTAPSIPCSVNMDPVDIF
NT seq 1860 nt   +upstreamnt  +downstreamnt
atgttctatcacttaatcgctcccttaaaaaataaaacccctcctttaacttacttttct
aaagagcggcaccaaaaaggagcgttagtcaatatccatttaaggaataaaacgcttttg
ggtgtcgttcttgaagaagtttcaaaacccccttttgaatgcctagaatcagaaaaaacc
ccttattttttactcccctttcaaatagagctcgctctatttatcgctcaatattactcg
gctaatctttcttcagtcttaagcctttttaccccttttaaagaatgcgatttagtgggg
ttagaaaaaattgagcctgctcttaatgtattaagccaaatgcaaacaaacgctttaaaa
gaattgcaaaaacattcagcaagcttgctctttggcgatacgggtagcgggaaaaccgag
atctatatgcattcaatcgctcaaactttagagcaaaaaaaaagcgctctgttgttagtg
ccagaaatcgctctcacccctcaaatgcaacaacgccttaaaagggtttttaaagaaaat
ttaggcttgtggcatagcaaactctctcaaaatcaaaaaaaacaatttttagaaaagctt
tattcgcaagaaatcaaattagtggtaggcacacgaagcgcgttgtttttgccccttaag
gagttgggtttaatcattgtagatgaagagcatgacttttcttataagtcccatcaaagc
cccatgtataacgctagggatttatgcttgtatttatcccataaattccctattcaagtg
gttttaggctctgctacgccaagtttaaatagttacaaacgctttaaagataaggcttta
gtgcgcttaaaggggcgctacacccctacgcaaaaaaacattatttttgaaaaaaccgag
cgttttatcacgcccaaactcctagaagcactaaaacaagttatagacaaaaacgagcaa
gccattatttttgtgcctacaagggctaatttcaaaaccttgctgtgtcaaaattgctat
aaaagcgttcaatgccccttttgtagcgtgaatatgagtttgcatttaaaaaccaacaaa
ctcatgtgccattattgccatttttcaagccctatccctaaaatttgcaacgagtgtcaa
agcgaagttttagtgggtaaaaggataggcaccatgcaagtgttgaatgagttggaaggc
cttttgaaaggcgctaaaatagcggttttagataaagatcacaccagcacgccaaaaaaa
ctccacaatattttaaacgatttcaacgctcaaaaaaccaatatcttaatcggcactcaa
atgataagcaaagggcatgattacgctaaagtgagtttagcggttgttttaggcatagac
aatatcattaagtctaatagttatagggctttagaagagggcgtgtcgttactttatcaa
atcgctgggaggagcgctaggcaaatttctggccaagtgttcattcaaagcaccgaaacc
gatctattagaaaatttcttagaagattatgaagattttttacaatacgaattgcaagaa
aggtgcgaactctacccgcctttttcaaggctgtgtttgttggagtttaagcataaaaac
gaagaaaaagcccaacaattgagcctaaaagcctctcaaaccctttcttcgtgtttggaa
aagggcgtaacgctctctagctttaaagcccccattgaaaaaatcgcctcttcttaccgc
tacctgattttgttgcgttccaaagaccctttaagcctgatcaaaagcgtgcatgcgttt
ttaaaaaccgcccctagtatcccttgcagcgtgaatatggatcctgtggatattttttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (27)   

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