KEGG   Helicobacter pylori SouthAfrica7: HPSA_06920
Entry
HPSA_06920        CDS       T01921                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
hes  Helicobacter pylori SouthAfrica7
Pathway
hes03030  DNA replication
hes03430  Mismatch repair
hes03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hes00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HPSA_06920 (dnaE)
   03430 Mismatch repair
    HPSA_06920 (dnaE)
   03440 Homologous recombination
    HPSA_06920 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hes03032]
    HPSA_06920 (dnaE)
   03400 DNA repair and recombination proteins [BR:hes03400]
    HPSA_06920 (dnaE)
Enzymes [BR:hes01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HPSA_06920 (dnaE)
DNA replication proteins [BR:hes03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HPSA_06920 (dnaE)
DNA repair and recombination proteins [BR:hes03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HPSA_06920 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: ADU85340
UniProt: E8QTX6
Position
complement(1395747..1399382)
AA seq 1211 aa
MKKTKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK
EGIKPIIGMEAYIHNDDNLASKETKQRFHLCLFAKNQEGYENLMYLSSMAYLEGFYYFPR
INKKLLREHSKGIIASSACLQGEVNYHLNTNNERNRRYGAKGYDEAKKIACEYQEIFEDD
FYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTL
NDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKKNPPTPPS
FKFTKAYAQNEGLDFEDDASYFAHKAREGLKERLILVPKEKHEQYKERLEKEIEVITNMK
FPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPER
ISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEA
DDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDIAKQVWEYSLNLENLNR
NAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVI
DDALKIIKTQHQISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFE
DIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTIVYQEQVMQIV
QTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGY
GFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPP
HINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGSEPIKNIIEERTKGDYKNLEDFIS
RVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFG
AMESETREQVILDMVDLGEHDAKTLLEYEYETLGIHVSGNPLDEFKEEVKGFKNLVKSID
IEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLNALEELDI
NKPLVFKCKIEEQEEVARLRLFEILDLESAREVKIPKARYKDPNKQKEDVREIPPIEMLA
SSSCSLAIVLENDVKKEFLRQIKESALKHQGKRPLYLIIKDKGKQCKIQSDLMVNEKIKD
DFKELEWRDLA
NT seq 3636 nt   +upstreamnt  +downstreamnt
atgaaaaaaactaaagcttttacgcatttgcacttgcacacggaatattcgcttttagat
ggggccaataagattaagattttagccaaacgcattaaagaattgggcatgaaaagcgtg
agcgtaaccgaccatgggaacatgtttggagcgattgatttttatacgagcatgaaaaaa
gagggcatcaagcctatcatcggcatggaagcgtatatccataatgatgataatctcgct
agtaaagaaaccaagcaacgcttccatttgtgtttgttcgccaaaaaccaagagggctat
gaaaatttgatgtatttaagctctatggcgtatttagaggggttttattatttcccgcgc
atcaataaaaaacttttaagggagcattctaaagggattatcgcttctagtgcatgcttg
caaggggaagtcaattaccatttgaataccaataatgagagaaatcgcaggtatggggcc
aagggctatgatgaagctaaaaaaatcgcttgcgaataccaagagatttttgaagacgat
ttttatttagaaatcatgcgccatggcattttagatcagcgattcattgacgaacaagtc
attaaaatgtctttagaaacggggttaaaaatcattgccacaaacgacacccactacacc
atgcccaatgacgctaaagcccaagaagtggcgatgtgcgtagcgatgggtaaaactcta
aacgataaggggcgcttgaaacactccgtgcatgagttttacattaaatcccctgaagaa
atggcgaagttgtttgcagacattccagaagcgttagaaaacactcaagaaattgcggat
aaatgcgttttagagattgatttaaaagacgataaaaagaaccccccaacccccccaagc
tttaaattcaccaaagcttacgcccaaaatgaggggctggattttgaagatgacgcttct
tatttcgctcataaggctagagagggcttgaaagaacgcttgattttagtgcctaaagaa
aagcatgagcaatataaagagcgcttggaaaaagaaattgaagtcatcacgaacatgaaa
ttcccagggtatatgctgatcgtgtgggattttatccgttacgctaaagaaatgggcatt
cctgtagggcctggtagggggagcgcggccgggagcttggtggcttttgcgctaaaaatc
acggatattgaccccttgaaatacgatttgctttttgaaaggtttttaaaccctgaaaga
atcagcatgcctgatattgatacggatttttgccagcgccggcgtaaggaaatcatagaa
tacatgattgaaaaatacggcaaatacaatgtggctcaagtcatcacctttaataaaatg
ttggctaaaggcgtgatcagagatgttgcaagggttttggacatgccttataaagaggct
gatgattttgccaaactcatacctaaccgcttgggtatcacgcttaagggctatgaaaaa
aatggcgagttcatagagggggcgtgggaattagagcctaaaatcaaggaattagtggaa
agcaatgacatagccaagcaggtgtgggagtattcgctcaatttagagaatttgaatcgc
aacgcaggcgtgcatgccgcagcgttagtggtggatagccaaaaagaattgtggcacaaa
acccctttatttgcctctgaaaaaaccggcggtatcgttacgcaatattccatgaagtat
ttagaaccggtggatttgatcaaatttgactttttggggcttaaaaccttgaccgtgatt
gatgatgcactcaaaatcattaaaacccaacaccaaattagcgtggattttttatcgcta
gatatggacgatccgaaagtgtataaaacgatccaaagcggcgatacggtggggatattc
cagattgaatccggaatgtttcaagggcttaacaagcgcttaaggccttcaagctttgaa
gacattattgctatcatcgcgctagggaggccaggccccatggaatcaggcatggtagat
gattttgtcaacagaaagcatggcattgagcctatcacttatgcgtttaaagaattagag
ccgattttaaagcccacttacggcacgatcgtctatcaagagcaggtgatgcaaatcgtg
caaactatcggcgggtttagtttgggcgaagcggatttgatccgccgcgcgatggggaaa
aaagacgctcaaatcatggcagacaataaggctaaatttgtagaaggggctaaaaattta
gggcatgatggccaaaaggcggctaatttgtgggatttgatcgttaaatttgccggctat
ggctttaataaatcgcattccgccgcctatgcgatgatcactttccaaacggcgtattta
aaaacttattacaagcatgagttcatggcagcgatgctcactagcgaatccaataagatt
gaatccgtggcgcgctatattgatgaggtcagggctttagaaattgaagtgatgcctccg
catatcaattcctctatgcaagatttcagcgtggcggagtttaaaaatcaaaagggcgag
ctagaaaagaaaatcgtgtttggtttgggcgcgattaaaggggtggggagcgagccgatt
aaaaacatcattgaagaaaggactaaaggggattataagaatttagaagattttatttca
cgggtggatttttccaaactcactaaaaaatctttagagccattagtgaaatccgggagc
ttggataatctgggttacacccgaaaaaccatgctcgccaacttggatttgatctgtgat
gccgggcgcgctaaagacaaggctaatgaaatgatgcaagggggcaattctctttttggg
gctatggaaagcgaaacaagagagcaggtcattttggatatggttgatttgggcgaacat
gacgctaaaacgcttttagaatacgagtatgaaactctaggtattcatgtttcaggcaac
cctttagatgagtttaaagaagaggttaagggctttaaaaatttagtcaaaagcattgac
attgaagaattagaaatcggctcgcaagcctacttattgggtaaaatcatggaagttaaa
aagaaaattggcaaacgaagcggtaaaccttatggcacagcggacattttagatagatac
ggcaagtttgaactcatgctttttgaaaagcaattaaacgctttagaagagttggatatt
aacaagcctttagtgtttaaatgcaagattgaagagcaagaagaagtggcgcgattaagg
ctttttgaaatcttggatctagaaagcgctagagaggttaaaatccctaaagcccgctat
aaagaccctaacaagcaaaaagaagatgtgcgcgaaatcccccccattgaaatgctcgct
tctagctcttgctctttggcgatcgtgttagaaaacgatgtgaaaaaagagtttttaaga
caaatcaaagagagcgctttaaaacaccagggcaaacgccccttgtatttgatcatcaaa
gacaagggcaagcaatgcaaaatccaaagcgatttgatggtcaatgaaaagattaaggac
gattttaaagaattggagtggagggatttagcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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