KEGG   Helicobacter pylori Shi169: HPSH169_01410
Entry
HPSH169_01410     CDS       T02038                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
hhq  Helicobacter pylori Shi169
Pathway
hhq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hhq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPSH169_01410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hhq03019]
    HPSH169_01410
   03009 Ribosome biogenesis [BR:hhq03009]
    HPSH169_01410
Enzymes [BR:hhq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     HPSH169_01410
Messenger RNA biogenesis [BR:hhq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     HPSH169_01410
Ribosome biogenesis [BR:hhq03009]
 Prokaryotic type
  rRNA helicases
   HPSH169_01410
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 P-loop_SecA AAA_30 AAA_22
Other DBs
NCBI-ProteinID: AFH98982
UniProt: A0A0E0W9P2
Position
279830..281308
AA seq 492 aa
MEFNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQVPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSKIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKTSNKKTHQREQARSFKKGQHQDRHP
KTNHHSKKPKRR
NT seq 1479 nt   +upstreamnt  +downstreamnt
atggaatttaaccaaccaccactccctacagaaattgatgatgacgcttaccataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccactagagaattagcc
atgcaaattagcgatgagattttcaaattgggcaaacacaccaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaagcaatgcgaatttattaagaaaaacccccaagtg
atgatcgctacaccaggaaggttgctagatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgtcttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacactgacatcacccaacgcttttatgtgatcaat
gagcatgagagggctgaagcgatcatgcgccttttagacacccaagtgcccaaaaagagt
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggagatatggatcaaagggatcggcgcgcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagccgtggg
ctagatattagcggtgtaagccatgtgttcaattaccacttgcccctaaataccgagagc
tatatccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcaatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcaaaaatt
gagctttttgaaatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaagggatcatcagtctttatgaacagcttactgaaatttttgagccgtct
caattggttttaaaacttttgagcttgcagtttgaaaccagcaaaattggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaacctctaacaaaaaa
acacaccagcgtgagcaagcgcgttctttcaaaaagggtcagcaccaagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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