KEGG   Heterobasidion irregulare: HETIRDRAFT_324142
Entry
HETIRDRAFT_324142 CDS       T03455                                 
Name
(RefSeq) hypothetical protein
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
hir  Heterobasidion irregulare
Brite
KEGG Orthology (KO) [BR:hir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hir03016]
    HETIRDRAFT_324142
Enzymes [BR:hir01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     HETIRDRAFT_324142
Transfer RNA biogenesis [BR:hir03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    HETIRDRAFT_324142
 Prokaryotic type
    HETIRDRAFT_324142
SSDB
Motif
Pfam: PseudoU_synth_1 RodZ_C
Other DBs
NCBI-GeneID: 20671023
NCBI-ProteinID: XP_009549445
JGI: Hetan2_324142
UniProt: W4K0C6
Position
Unknown
AA seq 533 aa
MESSTDAADPSQSESILDAESTLVAEAQPEGRKNRFATRRESAGFAKSRKNREKDTKNVG
RRSGRGTRRNDETAKEGSEEENVDKAPRLPKRQCALLIGFCGTGCSGMQMCPNVRTIEGV
LFEAMVKAGAVSQDNADDPVKVNLGRAARTDAGVHAAGNVVSIKMITDVPDVPDIVSHIN
SFLPPEIRLWGYVRVQNSFNARVSCDSRKYTYFFPSYLLIPPKPGSGLDQTLNNLPPSSS
ASNAAPVEQPTSHPFWSELAHADSTKEDDLIRKRKWRVGSEMVEKLREIAKKFEASHNFH
NFTVGRDFSDRSTQRHMKKIEVADPTVYGETEWISVMFHGQSFMLHQRKMMSALVLSCRT
STPTQIIDELYGPRQVLVPKMPSLGLLLEHPIFESYNAKIARVNDKLSPTDPLYRPPIDF
DIYKDAIEQFKQEHIYDRMRDIEDRGGVFDAWVRSIDAYSGNDLAYLNTKGIIPPSAVIK
KGERRANPLKERRKFDVTSFSSSGKIDLEIDEEEGEAEQESTLDKAELAEMEG
NT seq 1602 nt   +upstreamnt  +downstreamnt
atggaatcatcaacggatgctgctgatccctctcaatccgaaagcatactcgatgctgag
tctacattggtcgctgaggcacagccggaaggacgaaagaacaggttcgcgacgagacgg
gagtcggccggcttcgcgaaatcgcgcaagaacagggagaaggacacgaagaatgttggg
aggaggagcgggagggggacacggaggaacgacgagaccgcgaaggaaggctctgaggaa
gaaaatgtggacaaggctccgcgactaccgaagagacagtgtgccctgctcattgggttc
tgcgggacggggtgctccgggatgcagatgtgcccaaacgtgcgcacgatcgagggtgtg
ctgttcgaggccatggtgaaggccggtgcggtgtcgcaggacaacgcggacgatccagtc
aaggtgaacctggggcgagcggcgcgcacggacgcgggcgtgcatgcagccggaaacgtc
gtttccatcaagatgatcacagacgtgcctgacgttccagacattgtcagccacatcaac
tcctttctaccgcccgaaattcggctttggggttatgtccgtgtgcagaattcgttcaat
gctcgcgtgtcttgcgacagccgcaagtatacctacttcttcccttcatatcttctgatc
cccccaaagccagggagcggactggatcagacgttgaacaacctaccgccctcctcttcc
gcttccaatgcagcccccgttgagcagcccacctcgcaccctttttggtctgagcttgca
catgcagatagcacaaaagaggatgatctgatcagaaagcgaaaatggagagtaggctcg
gagatggttgagaagctcagagaaattgcgaaaaagtttgaagccagtcacaacttccac
aatttcacagtcggcagggacttcagtgatcggagcactcagagacatatgaaaaagatc
gaggtagctgatcctaccgtgtatggtgagacggagtggattagtgtcatgtttcacggg
caaagcttcatgctccatcagcgcaagatgatgtcggcattagtgctctcctgtcgcacc
agcactcccacacagatcatcgatgagctttacggcccgcggcaggtcctcgtaccgaaa
atgccttcccttggcctcctgctcgaacacccgatctttgaatcttacaacgccaaaatc
gcgcgcgtaaatgataagctttcgccgaccgacccgctatatcgacccccaatcgacttc
gacatatacaaagacgcgattgaacagtttaagcaggaacacatctacgatcggatgagg
gacatcgaagatcgaggcggagtgttcgacgcttgggtgcgttcaatcgatgcgtactct
ggcaacgaccttgcctacctcaatacgaagggcatcattccaccgtccgccgttatcaaa
aagggcgagcggagggcaaaccctttgaaagagcgaaggaaatttgacgtgacatctttc
tcttcgagtgggaagatcgatcttgagatagacgaagaagaaggggaggcagaacaggag
agcacgctggacaaagcagagctggctgagatggaaggatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system