KEGG   Haemophilus influenzae 10810 (serotype b): HIB_04140
Entry
HIB_04140         CDS       T01720                                 
Name
(GenBank) transcription termination factor
  KO
K03628  transcription termination factor Rho
Organism
hiu  Haemophilus influenzae 10810 (serotype b)
Pathway
hiu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hiu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HIB_04140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hiu03021]
    HIB_04140
   03019 Messenger RNA biogenesis [BR:hiu03019]
    HIB_04140
Transcription machinery [BR:hiu03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     HIB_04140
Messenger RNA biogenesis [BR:hiu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HIB_04140
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA_25 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: CBW28602
Position
425398..426660
AA seq 420 aa
MHLTELKNTPVSDLVKLGEEQMGLENLARLRKQDIVFAILKQHAKSGEDIFGGGVLEILP
DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQV
NDDKPEVSRSKILFENLTPLHANSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAP
PKAGKTMLLQNIAQSITHNYPDVELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRH
VQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKR
FFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRKIAERRVFPAID
FQRSGTRKEDLLTTADELQKMWILRKILNPMDEVDAMEFLIDKLMMAKTNEEFFEVMKRS
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgcatttaacagaacttaaaaatacgcctgtttctgatcttgtgaaactcggcgaggag
caaatgggcttagaaaatttagctcgtttgcgtaaacaagatattgtctttgcaatctta
aaacagcacgccaaaagtggcgaagatattttcggcggtggtgtgttagaaattttacca
gatggttttggtttccttcgttctgccgacagttcctatcttgcaggccctgatgatatt
tatgtttccccaagtcaaattcgtcgttttaatcttcaaactggggataaaatcgaaggc
aaaattcgtccaccaaaagaaggcgaacgctattttgcacttttaaaagttgatcaagtc
aatgacgacaaaccagaagtgtcccgtagcaaaatcttatttgaaaacttaacgccatta
catgctaactctcgtttaagaatggagagaggcaatggctcaacagaagatttaaccgcg
cgtattttggatttagcatccccaattggtaaaggtcaacgtggtttgattgttgctccg
ccaaaagcaggtaaaaccatgttgctgcaaaacattgcgcaaagtatcacgcataattat
cctgacgtggaacttatcgtattactgattgatgaacgcccagaagaagtgacagaaatg
caacgttcagtaaaaggcgaagtgattgcttctacttttgatgagccagcaactcgtcac
gttcaagtggcagaaatggtaatcgaaaaagcgaaacgttcagtagagcataaaaaagat
gtggtcattttacttgactctattacccgtttagcacgtgcttacaatacagtcactcca
gcttcaggtaaaattttatctggtggtgtggatgctaacgcattgcaccgtccaaaacgt
ttcttcggtgctgcgcgtaatgtggaagaaggcggtagtttaacgattattgccactgcg
ctagtagatacgggttcgaaaatggacgaagttattttcgaagaatttaaaggtacaggt
aatatggaattacacctttctcgtaaaatcgcagaaagacgtgtattcccagccattgac
tttcaacgctctggtactcgtaaagaagacttactcacaacagcggatgaattacaaaaa
atgtggattcttcgtaagattcttaatccaatggatgaagtggatgcaatggaattcttg
attgataagctgatgatggcaaaaaccaacgaagagttttttgaagtgatgaaacgttcg
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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