KEGG   Halobiforma lacisalsi: CHINAEXTREME20365
Entry
CHINAEXTREME20365 CDS       T04669                                 
Name
(GenBank) nuclease
  KO
K16899  ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
Organism
hlc  Halobiforma lacisalsi
Brite
KEGG Orthology (KO) [BR:hlc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hlc03400]
    CHINAEXTREME20365
Enzymes [BR:hlc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CHINAEXTREME20365
DNA repair and recombination proteins [BR:hlc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    AddAB pathway proteins
     CHINAEXTREME20365
SSDB
Motif
Pfam: PDDEXK_1 UvrD_C
Other DBs
NCBI-ProteinID: APX00172
UniProt: M0L894
Position
pHLAJ5I:6760..9948
AA seq 1062 aa
MDPTLLTGPQHARLEQRAFQRADDLAADSLGSILYITRNDARRSEIEDRWASSHKPLRLR
SETLDSVVRNWYENLYGPVETLSGQLNRRLTEYALDETTAETAGALAGEPASAALADSFS
SRFSLFDEAGVRTADTLETEFENSSLDDRIATATVDAYHYYRELYADHVDDWVNTRGELF
HGVATADQSLSTLSPEIDVVILSGYYEFRPVERHIIERIVQEFPTIALLPLHQDGRTGVD
VVASDALDVYESLDFETVSLEPKDESGRAFGAVTNALYRPDPETTAVPDGLNWRELPTPE
REIRFVARELRTELANGRDPDDFAVVIPGTNAYSSTVEDTFETFDIPHVTTAASQLTRTF
TGSVVHDLLRLAEPDPRAEDLTSLLANPLVDIVDNEQASTITAAARRRDTISAAPLLEAT
NAETNALLEDLLASLETLRTGDIEEATETFRRLLDDQFDLEAAVGDYASGAEQALEHRAY
EVVDEVLTSFETLEKVSTDQSPLALFTRAFDGIPIQTSQTAAGGHVEVMGLLDARMRSFE
KVFLVGLTSEHFPTTPERPAFFEEMTEAHPRFDTADERLRGRYLFATLLANVDALTITTP
ETGGDESAVVRSPVLDELQRVTGIEPETGVDDRIGSREDLQRHVATASDRRVAVSHAGDR
GDLSPEQTKRTDRGLQCADNRATATLSEHDGLLDPETVDAVYPPSEREPYSASRIEQYVE
CGFKFYADNVLEIEDPDDVEVVPTALETGSYVHDVLERFYADLQDDSEASVDLTDYDRDT
LADHLHTVAVEELRETDFEYDGLFYERWKAELFAGLGDEESVPFEAGVQPHDAPEQGLFA
TFLDNELSRAGAAAPYLFEPPFGEGLPESDSEPFSVERPDGSTVAIRGYIDRIDVNRDVE
QPEITLYDYKTGYAPYMTKTTGGTTFQLPIYLLAANEVIDGDLFDQGTLSATYYQVRPPN
DLKVPRGVESKFDSQTELRRFLEDVVPEWLGQIDDAIANGRFHTTLHSPRGANCRFCDYR
RACDVRHHRKREFVDTAREDEVAYVPLRVRDDEDLQTVMSDD
NT seq 3189 nt   +upstreamnt  +downstreamnt
atggatccaacgctccttaccggtccacaacacgctcgtcttgaacaacgggcgtttcag
cgggccgatgatctcgccgccgattcgctggggagtatcctctacattacccgcaacgat
gctcgtcgaagtgaaatcgaggaccgctgggccagttcccacaaaccactccgccttcgt
tccgagacgctcgattcggtcgttcgcaactggtacgaaaatctatacggtcccgtcgaa
acgctgtctggccagctaaaccgccgactcaccgagtacgcgctcgacgaaacgacagcg
gagacagcaggcgctctcgcgggcgagccggcctctgccgcgcttgcggattcgtttagt
agccgcttttcactcttcgatgaggcgggcgtcagaactgccgatacactcgagacggag
ttcgagaactcatcgctcgacgaccggattgcaacggccaccgtcgacgcctatcactac
taccgcgaactgtatgccgatcacgtcgacgactgggtcaatacccgcggtgaactgttc
catggcgtcgcgacggcagaccagtcgctatcaacactctcacctgagatcgacgtcgtg
attctctccggctattacgagttccgtcccgtcgaacgccacattatcgagcgtatcgtt
caggagttcccgacgattgcactgctgccactccatcaggatggccgaacgggtgtcgat
gtcgtcgcgagtgacgccctggatgtctacgagtcgctggatttcgagacggtgagtctc
gagccaaaagacgagtccggaagagcgtttggggcggtcaccaacgctctctatcgcccg
gatcctgagacgaccgcagttccggatgggctcaactggcgcgaactgccgacgccggaa
cgcgaaattcgcttcgtcgcccgcgaactccgaaccgagctggcgaacggacgggatcca
gacgacttcgcggtcgttattccaggcacgaatgcgtattcgagcaccgtcgaggacacg
ttcgagacgttcgatattccacacgtgacgactgccgcatcgcagctgacacggacgttc
accggcagcgtcgtccacgatctgctgcgccttgctgagcccgacccacgggctgaagac
ctcacgtcgctgctagcgaatcccctggtcgatatcgtcgacaatgagcaagcctcgacc
atcactgctgctgctcgtcggcgcgatacgatttcggcagcaccgcttctcgaggcgacc
aacgccgagacgaacgcattactcgaggatctgttagcgagcctggaaacgcttcgaacg
ggagacatcgaagaagcaaccgagacgttccgccgactgctggacgatcagttcgacctc
gaggcagctgtcggggattacgccagcggtgccgagcaggcactcgaacaccgagcctac
gaggtcgttgacgaggtgctcacctccttcgaaactctggagaaagtcagtaccgaccag
tccccactcgcgctgttcactcgggccttcgatggcatcccgattcaaacatcgcaaacc
gctgctggaggccacgtcgaagtgatggggctgctcgatgctcggatgcgatcgttcgag
aaggtctttctcgttggcctgacgagcgaacacttcccgacaacgccggaacgaccggcc
tttttcgaggagatgaccgaggcccatccccggttcgacaccgccgacgagcgcctccgt
ggtcgatatctgttcgcaaccctgctcgcgaacgtcgatgcgctcacgatcactacaccg
gagacaggcggtgatgagtctgccgtcgtccgctcccctgtcctcgacgaactacagcgt
gtcaccgggatcgaacccgaaaccggtgttgacgatcgtatcggctctcgagaggacctc
cagcgtcacgtcgcgactgcctccgaccgtcgtgtcgcagtcagtcatgccggcgaccgg
ggcgatctttcacccgagcaaacgaagcgcactgaccgtggcctccagtgcgcggacaac
agggcaacggcaaccctttccgaacacgacggcctgctggaccccgaaacggttgacgcg
gtttatccaccgtcggagcgagaaccctacagtgcgagtcgaatcgagcagtacgtcgag
tgcgggttcaaattctatgccgacaacgttctcgagatcgaggatcctgacgacgtcgaa
gtcgtgccaacggctctcgagaccggatcgtacgttcacgacgttctcgagcgcttctac
gcagacctgcaggatgactccgaagcgagcgtcgatctcaccgactacgaccgagatacg
cttgccgaccatctccacacggttgccgtcgaagaactccgtgagaccgatttcgagtat
gatgggctcttctacgagcgctggaaggcagaactctttgcgggccttggtgatgaggag
tccgtcccattcgaagccggcgtacaaccccacgatgctcccgaacaaggactattcgcc
acgttcctcgacaacgaactctccagggccggcgctgctgctccatacctgttcgagcca
cccttcggcgaagggcttccagagtccgatagcgagccgttttcagtcgaacggccagat
ggatcgacggttgcgattcggggctatatcgaccgtatcgacgtgaatcgtgacgtcgaa
caaccggagatcacgctctacgactacaagaccgggtacgcaccatacatgacgaaaacg
actggcggaacgacgttccagctccccatctatctgctcgctgcgaacgaggtcatcgat
ggtgatctgttcgaccagggcaccctctcagcgacgtactaccaggtgcgaccgccgaac
gatctcaaggtccccaggggggtcgaatcgaagttcgactcgcaaaccgaactccggcgc
ttcctcgaggatgtcgttcccgagtggctcggacagatcgacgacgcaatcgccaacggg
cggttccacacgacgttgcactctccccgaggtgcgaactgccgcttctgtgactaccgt
cgggcgtgtgacgttcgccaccatcgcaagcgtgagttcgtcgacaccgctcgcgaggac
gaggtcgcatacgtgccgctccgtgttcgagacgacgaggatctgcagacggtgatgagc
gatgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system