KEGG   Halostagnicola larsenii: HALLA_19110
Entry
HALLA_19110       CDS       T03008                                 
Name
(GenBank) tRNA splicing endonuclease
  KO
K01170  tRNA-intron endonuclease, archaea type [EC:4.6.1.16]
Organism
hlr  Halostagnicola larsenii
Brite
KEGG Orthology (KO) [BR:hlr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hlr03016]
    HALLA_19110
Enzymes [BR:hlr01000]
 4. Lyases
  4.6  Phosphorus-oxygen lyases
   4.6.1  Phosphorus-oxygen lyases (only sub-subclass identified to date)
    4.6.1.16  tRNA-intron lyase
     HALLA_19110
Transfer RNA biogenesis [BR:hlr03016]
 Prokaryotic type
  tRNA spricing factors
   tRNA splicing endonucleases
    HALLA_19110
SSDB
Motif
Pfam: tRNA_int_endo tRNA_int_endo_N
Other DBs
NCBI-ProteinID: AHG00585
UniProt: W0JTL2
Position
complement(2671240..2672286)
AA seq 348 aa
MTLEGRFDEDAGVVRVGADARQRYHDARGYGYPLEGNEIALAPVEAAHLLYRGDLEAVVD
DGDRLAFRDLLAREPGTDFGVRFLVYADLRSRGFYLSPAAEPWVTDPPDGDFAVFPRGKG
PGDGEVAYALRVIGERTDIPAAALEESVLAVVDEESEITYFDVNPREPTGSSATIDSVRG
VDADLLADRVVVWEPPADLYETAFYGQPLEGREYDRPTLQCSLLEAAHLAERGVLDLESS
VVRERGRAVEGERFDRRLRVYETLRGRGVVPKTGYKFGADFRTYADVDSVDNLGHSELLI
RVLSGDHVFEPRDLALDVRLAHGVRKTMVFALVDGESVEWWSLERLTP
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgacactcgagggtcggttcgacgaggatgcgggcgtcgtcagggtcggcgcggacgcg
cgccagcgctatcacgacgcacggggctacggctatccgctcgagggcaacgaaatcgcg
ctcgcgcccgtcgaagcggcacacttgctctatcgcggcgatctcgaggcggtcgtcgac
gacggggaccgactcgcgttccgggacctgctcgcccgcgagcccggcaccgatttcggg
gttcgattcctcgtgtacgccgacctgcgctcgaggggtttctatctctcgcccgctgcg
gagccgtgggtgaccgatccgcctgatggcgattttgcggtgtttccccgcggcaaggga
cccggcgacggcgaggttgcctacgcgctgcgagtgatcggcgagcgaaccgacattccg
gccgcggccctcgaggagagcgtcctcgccgtcgtcgacgaggagagtgagatcacgtac
ttcgacgtgaacccgagggagccgaccggaagctccgcgacgatcgattcggtccgggga
gtcgacgccgacctgctcgccgatcgggtcgtcgtctgggagccgccggcggatctctac
gagacagccttctacggccaaccgctcgagggccgggaatacgaccggccgacgctgcag
tgttccctgctcgaggcggctcacctcgcggagcggggggtcctcgacctcgagtcgtcg
gtcgttcgcgagcgggggcgggcggtcgaaggcgagcgattcgatcggcgacttcgggtg
tacgaaacgttgcgcgggcgcggcgtcgttccgaagacgggctacaagttcggggctgac
tttcggacctacgccgacgtcgattcggtcgataatctgggccactccgagttgctgatc
cgggtgctctccggggatcacgtcttcgaaccgcgagacctcgcgcttgacgttcggctc
gcccacggcgttcggaagacgatggtgttcgcgctcgtggacggcgagtcggtcgagtgg
tggtcgctcgagcgacttacaccgtag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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