KEGG   Halobacillus mangrovi: HM131_17800
Entry
HM131_17800       CDS       T04799                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
hmn  Halobacillus mangrovi
Pathway
hmn03030  DNA replication
hmn03410  Base excision repair
hmn03420  Nucleotide excision repair
hmn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hmn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HM131_17800 (ligA)
   03410 Base excision repair
    HM131_17800 (ligA)
   03420 Nucleotide excision repair
    HM131_17800 (ligA)
   03430 Mismatch repair
    HM131_17800 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hmn03032]
    HM131_17800 (ligA)
   03400 DNA repair and recombination proteins [BR:hmn03400]
    HM131_17800 (ligA)
Enzymes [BR:hmn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HM131_17800 (ligA)
DNA replication proteins [BR:hmn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HM131_17800 (ligA)
DNA repair and recombination proteins [BR:hmn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HM131_17800 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HM131_17800 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     HM131_17800 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HM131_17800 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT RNA_pol_A_CTD HHH HHH_3 5_3_exonuc BRCT_2 HHH_8 AphA_like
Other DBs
NCBI-ProteinID: ARI78577
UniProt: A0A1W5ZZC8
Position
complement(3553916..3555919)
AA seq 667 aa
MNGSEAKERIDALKQELEQYNYEYHTLDQPSVSDYEYDKKMRELIDLEEEFPEHQTPDSP
SQRVGGAPLEAFEKVQHIIPMLSLGNAFDDQELRDFDRRVRNGTNEDVNYVCELKIDGLA
VSLRYEDGLFVRGATRGDGTTGEDITKNLKTIRNIPLRLKKPETLEVRGEAYMPKRSFMA
LNEAREANEDEPFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGVGQWEDDPADSHSERLE
KLKELGLKTNPEWKKCNNIDEVIDYVHSWVERRADLDYEIDGIVIKVDRLDQQETLGFTA
KSPRWATAYKFPAEEAVTHLRDIELSVGRTGVVTPTAILDPVKVAGTTVQRASLHNEDLI
REKDIRIGDTVVIKKAGDIIPEVVRVMEDQREGNEEPFSMPETCPECDSKLVRLEEEVAL
RCINPNCPAQLREGLIHFVSRNAMDIEGLGEKVIAQLFQEQLIHNIADLYKLEREQLLEL
ERMGEKSVQNLLQAIEASKENSLERLLFGLGVRYVGTKAANTLAQEFETMDNLLEADAER
LEAIPEIGEKMADSIARYFAKPQVIQLLEELKGLGLNMEYKGPKKSEQPEDSPFKDKTIV
LTGKMENYSRSEAKKIVEELGGKITGSVSKNTDLLIAGEDAGSKYTKASDLGIEIWDEEE
FTKALSN
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgaatggatctgaagcgaaagaaagaattgacgctttgaaacaagagcttgaacaatac
aattatgaataccacacgcttgatcaaccaagtgtttcagactatgaatatgataaaaaa
atgcgtgagctgattgatttagaggaggagtttccggagcaccagacgcccgattctccc
tctcagcgcgttggtggagctccgcttgaagcgtttgagaaagtccagcatatcatccct
atgctcagcctcgggaatgcatttgatgaccaggagctacgcgattttgatcgccgcgtc
cgtaatggtaccaatgaagatgtaaactatgtctgcgagttgaaaattgatggcctcgct
gtgtctcttcgttatgaggacggcttgttcgtccgcggtgccactcgtggtgacggtacg
acaggtgaggacattaccaaaaacttgaagacgattcgcaatattcctcttcggcttaag
aaacccgagacgcttgaagtccgcggagaagcgtatatgccgaagcgctcgttcatggcg
ttgaatgaagcgcgtgaagccaatgaggatgagccatttgcgaaccctcgaaatgcagcg
gcaggttcactgcgtcagctcgatccgaagattgcagctaagcgtaatctggatatcttt
ttatatggggttggccagtgggaggatgatccagctgattcccacagcgaacgcttagaa
aagttaaaagaactcggattaaaaacgaacccggaatggaaaaagtgtaacaatattgac
gaagtcatcgactatgttcatagctgggtggaacgccgggcggatcttgactatgaaatt
gacggcattgtaataaaagtggatcgtcttgatcagcaggaaacgcttggattcacagcg
aaaagcccacgctgggcaacggcctacaagtttccagctgaagaagctgtaacacacctc
cgtgacattgagctcagcgttggccgtacaggggtcgttacaccgactgccattcttgat
ccggtaaaagtcgctggtacgaccgtgcaacgcgcatctcttcataacgaagacttgatc
cgtgagaaggacatccgcattggggatacagtggtcattaaaaaagcaggcgatatcatt
ccggaagttgtccgagtcatggaggatcagcgtgaaggcaacgaagagccgttttccatg
ccagaaacatgccctgaatgtgacagtaaactcgtccgtctggaagaagaagtagcgcta
agatgtatcaatccgaactgtcccgcgcagcttcgtgaagggctgattcactttgtttcg
cgaaatgcaatggatattgaaggacttggggaaaaagtgatcgcacagcttttccaggaa
caactcatccataacattgctgatctttataagcttgagcgcgaacagctgttggagctt
gaacgtatgggtgaaaaatcggtgcagaatcttttgcaggctatcgaagcttcgaaagag
aattcgttggagcgtctgcttttcgggctcggtgtccgatacgtcggaacgaaagcagca
aatactctagctcaggaatttgaaacgatggacaacctgctagaagcggatgctgaaaga
ctcgaagctattccagaaatcggagaaaagatggccgactctatcgcgcgttacttcgct
aaacctcaggtcatccagttattggaagagttaaaaggtctcgggttgaacatggaatat
aaaggaccaaagaagagtgaacagccggaggattcaccgtttaaagacaaaactatcgta
cttactggaaaaatggaaaactacagccgttcagaggcgaagaaaatcgtagaggagctc
ggaggcaagataacaggaagtgtcagtaaaaatacagaccttctgattgctggggaagac
gccggttccaaatatacgaaagcctctgatttaggtattgaaatttgggatgaagaagag
tttacgaaagctttatccaactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (34)   

Download RDF
DBGET integrated database retrieval system