KEGG   Helicobacter mustelae: HMU09980
Entry
HMU09980          CDS       T01191                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
hms  Helicobacter mustelae
Pathway
hms03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hms00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HMU09980 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hms03400]
    HMU09980 (mfd)
Enzymes [BR:hms01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HMU09980 (mfd)
DNA repair and recombination proteins [BR:hms03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      HMU09980 (mfd)
SSDB
Motif
Pfam: DEAD Helicase_C TRCF CarD_TRCF_RID UvrB_inter ResIII DUF3638 SNF2-rel_dom
Other DBs
NCBI-ProteinID: CBG40255
UniProt: D3UID2
Position
complement(1130865..1133840)
AA seq 991 aa
MQANLYAHLTKKQPPQILVVEDDKEAQSAFHLAEYCYEKGILTKKPLVLPDFRAKKGEDL
RSFQEEFLDLLVGLREFYAQDCFLIAPLSSVLYPLPKKELLEPFVISKEEPLDVRDLKEK
LVHFGYEVVEIVEMDGEVSFRGDILDIAIPQDKSYRLSFFDIECESIREFDVQSQKSKTL
ELESLSIPPAVFHLSKEQYERMIEEIAGLDTDSFYKDIFSLGFWCLGDLGWEPLRQMHTI
LSPNAKNSLTEVFDFVSDSPYGKEFFLQLPSLQEQKDYADIRIEAKNLEYFLDLNADKPI
TILVPTQMLKEQFEARQIHAEISSLVVNISTPDCFIISLNQIQKSRKKQKPRIAINELNV
GEYVVHIQYGIGVFGGIEQAKILGAVRDFIRIDYQGGDSLLLPVENLNLIDRYVAGSSGV
PMMDRLGKGSFAKLKEKIKKKLFEIADSIISLAARRKLIEGKKIDTTLPEILFFKEQAGF
VLTEDQERCIQEIFADMSSGQVMDRLLSGDVGFGKTEVAMNAIYAACQNGFQALMIVPTT
LLALQHYHTLKERLKGLRVARLDRFVSARSKKGILQGLLEGKIDVVVGTHSLLGVGFKNL
GLIVIDEEHKFGVKQKEAIKSLSKDVHLLSMSATPIPRTLNMALSQIKGMSSLLTPPSER
QSTKTFVKEKSASLIKEVILRELRRNGQVFYIHNNIANIPMIERELKALLPQLEIALLHS
QIDSKTTEEILLSFAEKKTHLLLCTSIVESGIHLPNANTIIVDGADHFGLADLHQLRGRV
GRGDREGFCYYLIDDRESITQEATKRLLALEKNSFLGSGAMIAYQDLEIRGGGNLLGEAQ
SGHIKNIGYNLYLKMLEDAIYQLSSNKEQIEERDVELKLQVSAYLDSHLISSDTLRLELY
RRLSLCKDKECVYAIEGEIADRFGELDFYTKQFLKLILIKILARGLGITQISNFKKSITL
FFGDGNKKFLQADEEEQILDEILKFLHKSRA
NT seq 2976 nt   +upstreamnt  +downstreamnt
atgcaagcaaatctctatgcacatctcacaaaaaagcaaccccctcagattcttgttgta
gaagatgataaagaagcccaaagcgcattccatcttgcagagtattgctatgaaaaagga
attttgacaaaaaaacctctagtgctgccagattttcgtgccaaaaagggggaggatcta
aggagttttcaagaggaatttttggacttattggtaggcttgcgcgaattttatgcacaa
gattgctttttgattgctcctctttctagcgtgctctacccccttcccaaaaaggaattg
ttagagccctttgtgatctccaaagaagagcccttggatgtgcgcgatctcaaagaaaaa
ttggttcattttggctatgaggtcgtggagattgtcgagatggatggggaggtgagtttt
cgcggggatattcttgatattgccatcccgcaagacaagagctatcgcttgagttttttt
gacatagaatgtgagagcatcagggaatttgatgtgcaaagccaaaaaagcaaaacccta
gagctagagagtcttagcattcctccagcggtgtttcatctctccaaagagcaatatgaa
aggatgatagaagaaattgcaggtcttgatacagatagtttttataaagatattttttct
ctaggattttggtgtttgggggatcttggatgggagccattgaggcagatgcatacaatt
ttaagccccaatgcaaaaaactccctcacagaggtttttgattttgtgagcgatagtccc
tatggcaaggaatttttcttgcaattgccaagcttgcaggagcaaaaagattatgcagac
attcgcatagaagccaagaatttggagtattttttggatttgaatgcagacaaacccatc
acgattcttgtgccaacacagatgttaaaagagcaatttgaagcaaggcaaatccatgca
gaaatctctagtcttgtggtaaatatttccacacctgattgttttatcatttcccttaat
caaatccaaaaaagcagaaaaaaacaaaagccacgcattgccatcaatgaactaaatgta
ggggaatatgtggtgcatattcaatatggtatcggggtgtttggtgggatagagcaggca
aagatcttgggggcagttagggattttattcgcattgattaccagggaggggattctttg
cttttgccagtggaaaatctcaatctcatcgatcgttatgtagctggatctagtggtgtg
cccatgatggataggcttggcaagggcagctttgcaaaacttaaagaaaaaatcaaaaaa
aagctctttgaaattgcagattctatcatctctttggcagcgcgtcgtaagcttattgaa
ggcaaaaaaattgacaccactctgcctgagattttgttttttaaagaacaagcaggcttt
gttcttacagaggatcaagagaggtgtatccaagagatttttgcagacatgtcaagtggt
caggtgatggataggctattaagcggagatgttgggtttggcaaaacagaggtggcgatg
aatgccatttatgcagcgtgtcaaaatggctttcaggctttaatgattgttcctactacc
ttattggctctgcagcattatcacaccttgaaagaacgcctcaagggtcttagagtcgcg
aggctggatcgatttgtgagcgcaaggtcaaaaaagggcatattacaggggttgttagag
gggaagattgatgtggtggtagggacgcatagcctgcttggagttggctttaagaatcta
ggacttattgtaattgatgaagagcataaatttggcgtgaaacaaaaagaggcgataaaa
tctttgagcaaagatgtgcatttgctaagcatgtctgctacccccattccgcgtacatta
aatatggcactttcgcaaatcaagggaatgagttctttgctcactcctccaagtgagcgc
caaagcaccaaaacttttgtcaaggaaaaaagcgcctctttgattaaagaggtgattttg
cgggaattgcgccgcaatggacaggttttttatatccataacaatattgcaaatatcccc
atgattgagcgcgaactcaaggcattactgcctcagctagaaattgccctcctgcattct
cagattgattctaagactacagaggaaattctgctttcttttgcggagaaaaaaacccat
cttttgctttgtacttccatcgtggaatctggcatccatcttcccaatgccaatactatt
attgttgatggtgcagatcattttgggttggcagacttgcaccaattacgcggaagagtg
ggaagaggagatagagaggggttttgctactatcttattgatgatagggaatctatcacg
caagaagccaccaagcgccttttagcactggagaaaaattcttttttgggtagtggtgcg
atgattgcttatcaggatttagagattagaggcgggggaaatttgctaggagaggcccaa
agtgggcatatcaaaaacatcggttataatctctatctcaagatgttagaggatgcgatt
tatcaattaagcagcaacaaggagcagatagaagagagggatgtggagctcaaactccaa
gtctctgcctatcttgattctcatctcatttctagtgataccctgcgcctagagctttat
cggcgcctatctctttgcaaggacaaggaatgtgtctatgccattgaaggggagattgcc
gatcgctttggtgaacttgatttttatacaaagcaatttttgaagctgattttgattaag
atcctagcaagggggcttgggattacacaaatctctaatttcaaaaaaagcattacgctt
ttttttggtgatgggaataagaaatttttgcaggcagatgaggaggagcagattttagat
gagattttaaaatttttgcataaatcccgggcctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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