KEGG   Halomicrobium mukohataei: Hmuk_0272
Entry
Hmuk_0272         CDS       T00982                                 
Name
(GenBank) ribonuclease II
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hmu  Halomicrobium mukohataei
Pathway
hmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hmuk_0272
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hmu03019]
    Hmuk_0272
   03016 Transfer RNA biogenesis [BR:hmu03016]
    Hmuk_0272
Enzymes [BR:hmu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Hmuk_0272
Messenger RNA biogenesis [BR:hmu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Hmuk_0272
Transfer RNA biogenesis [BR:hmu03016]
 Prokaryotic type
  tRNA degradation factors
   Hmuk_0272
SSDB
Motif
Pfam: RNB DUF6000
Other DBs
NCBI-ProteinID: ACV46409
UniProt: C7NX44
Position
268118..269431
AA seq 437 aa
MSNEDAQAEAGTPEGQGPVEIDEEMARHMANKREELFEKFEIRDAFPPEVMEEAEARTTD
VQAEIADEVDEREDLREMTTWTTDPIDAQDFDDAISVEERDDEYVLWVHIADVTHYVNPD
TAMWEEAVERGNTVYLPGYTIHMLPPMLAETVCSLVPNEDRLAHTVEMHLDKDDLGYEEI
DIYKSVIRSDARLTYTEAERLLDEPETAEELLEDQRVDLAEKTELIWNLADAMHEQRKEE
GSLVLNPARDRAHTIIEECMLKANKAVTHELMWDRGVEAMYRVHPQPSPEEWDEALVEIQ
ELDGVSIPGDAWDDPRKAVNATLEQAPGRQLDKIQWAVMKVMPRAKYMNDPFGGHHALNF
EIYGHFTSPIRRLSDLINHWIVYTNDVPEDLIALCDRASDKQKAAETCEREYKQFLEEIG
LDPSAVNNRGLEVVDED
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgagtaacgaggacgcgcaggccgaggccggcacgccggaggggcaaggccccgtcgag
atcgacgaggagatggcccgccacatggccaacaagcgcgaggagctgttcgagaagttc
gagatccgcgacgcgtttccgcccgaggtgatggaggaggccgaagcgcgaaccactgac
gtgcaggccgagatcgccgacgaggtcgacgagcgcgaggacctgcgagagatgacgacg
tggaccacggacccgatcgacgcgcaggacttcgacgacgccatctccgtcgaggaacgg
gacgacgagtacgtcctgtgggtccacatcgccgacgtgacccactacgtcaaccccgac
accgcgatgtgggaagaggccgtcgagcggggcaacaccgtctacctgcccggctacacc
atccacatgctgccaccgatgctggccgagactgtctgttcgctcgtccccaacgaggat
cggctggcccacaccgtcgagatgcacctcgacaaggacgatctgggctacgaggagatc
gacatctacaagtcggtgatccgcagcgacgcccggctcacctacaccgaggccgagcgc
ctgctcgacgagcccgagacggccgaggagctactcgaagaccagcgcgtcgacctggcc
gaaaagaccgaactcatctggaacctcgcggacgcgatgcacgagcaacgcaaggaagag
gggtcgctcgtgctcaacccggcccgtgaccgcgcccacacgatcatcgaggagtgcatg
ctcaaggccaacaaagccgtcacgcacgaactcatgtgggatcgcggcgtcgaggcgatg
taccgcgtccacccccagcccagccccgaagagtgggacgaggccctcgtcgagatccag
gaactcgacggcgtctcgatccccggcgacgcctgggacgacccacggaaggccgtcaac
gcgacgctggagcaggcaccgggccgacagctggacaagattcagtgggccgtcatgaag
gtgatgccccgcgcgaagtacatgaacgaccccttcggcggccaccacgccctgaacttc
gagatctacgggcacttcacctcgccgatccgacggctctcggacctgatcaaccactgg
atcgtctacacgaacgacgtgccagaggacctgatcgcgctgtgtgatcgcgccagcgac
aagcagaaggcagccgagacctgcgagcgcgagtacaagcagttcctcgaagagatcggt
ctcgatccgtctgcggtgaacaatcgcgggctggaagtagtggacgaggactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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