KEGG   Halothermothrix orenii: Hore_15730
Entry
Hore_15730        CDS       T00838                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
hor  Halothermothrix orenii
Pathway
hor03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hor00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hore_15730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hor03019]
    Hore_15730
   03016 Transfer RNA biogenesis [BR:hor03016]
    Hore_15730
Enzymes [BR:hor01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Hore_15730
Messenger RNA biogenesis [BR:hor03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Hore_15730
Transfer RNA biogenesis [BR:hor03016]
 Prokaryotic type
  tRNA degradation factors
   Hore_15730
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 RNase_II_C_S1 CTC1_2 FACT-Spt16_Nlob DUF2526
Other DBs
NCBI-ProteinID: ACL70322
UniProt: B8CYF3
Position
complement(1684322..1686442)
AA seq 706 aa
MSARDKIMEFMADKAERPMSAAELMKVFKIEKDQKGIFINLLKKLVKEGLLFKTQDGKYG
IPEKMDLIPGRIEGNPRGFAFLIPDDPTRDDIFISLENLKGAMHNDRVFVRLLSRQKGKN
REGEVVKIIERANHQVVGNLEKSKYFGFVVPDNKRIFYDVFIPKEELNGARQNQKVVAEI
TRWPEKKRNPEGKIIKILGSRGERGVDIEGIIYQLGLPQEFDYEVLEEAKSIPLEISKGD
LKGRRDLRAMPMVTIDGADAKDLDDAVSIEEVDDNQVRLGVHIADVSHYVKEDSALDREA
LKRGTSIYLVDRVIPMLPERLSNGICSLNPNQDRLTMSVFITYQLEPFKLMEYEIVPSVI
KTNYRLTYDEVREILVHKNKAAIQKYRDFVPYLKLMNKLRKRLREERVARGSIDFDMPEV
KVILNEDGKPVDIINRVHGIPEQLIEEFMIAANRVVAEDMYWRQIPFIYRVHDQPDHGRM
ADFNEFIHNFGYHLKGVNNEIHPRELQELLQLVEGRPEERLITRILLRSMKQAVYSDQNI
GHFGLALDYYTHFTSPIRRYPDLMIHRIIKEVIKKGYLPARRQEELEEKLFEVAEHSSLQ
ERKAMEAERDSVDLKKVEYMKDKTGEEYEGIINGVTNFGFFVELDNTVEGLIHVENLEDD
YYHYVEEQHALIGERTRKTYRFGDRVRVRVERVNLDERQIDFSLIE
NT seq 2121 nt   +upstreamnt  +downstreamnt
atgagcgctagagataaaattatggaatttatggccgataaggccgaacggcctatgtcg
gccgccgaattaatgaaagtatttaaaattgaaaaggatcagaaggggatatttattaac
cttttaaaaaaactggttaaagagggtcttctttttaaaacccaggatggtaaatacggt
attcccgagaaaatggacctgattcccggtcgtattgagggtaaccccaggggatttgcg
tttttaatccctgatgacccgacccgggatgatatatttattagccttgaaaatctaaaa
ggggccatgcataatgaccgggtctttgtcagacttctttcaaggcaaaagggtaaaaac
agagagggagaagttgtaaaaatcatagaacgggccaaccaccaggtggtcggcaacctg
gagaaaagcaagtactttggctttgtagtccctgataataaaagaattttttatgatgtt
tttattccgaaagaggaattaaacggggccaggcaaaaccagaaagtggttgctgaaata
accagatggcctgaaaaaaagagaaaccctgaaggtaagataattaaaatcctgggctcc
cggggagaacggggagtagacatagaggggataatttatcagctgggtcttccccaggag
tttgattatgaggtccttgaggaagcaaagtctattccccttgaaataagtaaaggtgac
ttaaagggaagaagggaccttagagctatgcccatggttacaattgacggggctgatgct
aaggaccttgatgatgctgtatccattgaagaggtggatgataaccaggtacgcctgggg
gtccatattgccgatgtctcccattatgtaaaagaagatagtgcccttgatcgggaggct
ctgaagaggggaaccagtatttatctggtggaccgggttattccgatgcttcctgagagg
ctttccaatggtatctgtagccttaaccccaatcaggaccggttaaccatgtcggtcttt
attacttatcagctggaaccctttaaactgatggagtatgagatcgttcccagtgttatc
aaaaccaattaccgtttaacctatgatgaggtcagagaaatccttgttcataaaaataaa
gcggcaattcaaaaatacagggattttgttccctatttaaagttaatgaataagctcagg
aaaagattaagggaagaaagggtagcccggggtagcattgattttgatatgcccgaggta
aaggttatccttaatgaagatggtaagccggttgatattataaacagagttcatggtatt
cctgaacagcttattgaggaatttatgattgcagccaatcgggtagttgctgaagatatg
tactggcgacagataccctttatctacagggttcatgatcagcctgatcacggcaggatg
gctgactttaatgaatttatccataattttggctaccatttaaagggggttaataatgag
atacacccccgggaattacaggaactgcttcaactggtggaagggagaccggaagaacgc
ttgattaccagaatacttttaaggtccatgaaacaggcagtctactcagaccagaatatt
ggccattttggactggctctcgattattatacccactttacatccccaataaggcggtat
cccgaccttatgattcaccggattattaaagaggttattaaaaaaggttatctaccagcc
cggaggcaggaagaactggaagagaaattatttgaagttgctgaacacagctccctccag
gaaagaaaagccatggaagctgaacgggactctgttgatttgaagaaggttgaatatatg
aaggataaaactggagaagagtatgaaggtattattaacggggttaccaattttggcttc
tttgttgaactggataatactgttgaggggcttatccatgttgaaaatctggaggatgat
tactatcattatgtggaagaacagcatgctttaattggtgagaggacccggaagacttac
cggtttggtgacagggtaagggtcagggttgaacgggtcaatctagatgaaagacagata
gattttagcctcatcgagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (44)   

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