KEGG T00786: HPP12

Helicobacter pylori P12: HPP12_0509

Entry

HPP12_0509        CDS       T00786

Symbol

gyrB

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

hpp Helicobacter pylori P12

Brite

KEGG Orthology (KO) [BR:hpp00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hpp03032]
    HPP12_0509 (gyrB)
   03400 DNA repair and recombination proteins [BR:hpp03400]
    HPP12_0509 (gyrB)
Enzymes [BR:hpp01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     HPP12_0509 (gyrB)
DNA replication proteins [BR:hpp03032]
Prokaryotic type
  DNA Topoisomerases
   HPP12_0509 (gyrB)
DNA repair and recombination proteins [BR:hpp03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      HPP12_0509 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3 Peptidase_U32

Other DBs

NCBI-ProteinID:

ACJ07663

UniProt:

B6JL85

Position

533075..535396

AA seq 773 aa
MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINIT
LTDEGSCIVEDNGRGIPVDIHPTERIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV
VNALSKRLIMTIKKEGQIYRQEFEKGIPTSELEIIGKTKSTKESGTTIEFFPDESVMEVV
EFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPIIS
FKNMDEETRTSIEVALAYTDDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDNN
IKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLE
ENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFL
VEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESF
DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTE
IYLKDSVALDHFLIEHGINSVDIEGIGKNDLMNLLKVVRHYRYALLELEKRYNLLEILRF
LIETKDALSLDMKVLEKSILEKLEGLNYQILRSFATEESLHLHTQTPKGLVEFNLDDNLF
KEVLFEEAHYTYQKLMEYNLDFLENKDILAFLEEVENYAKKGANIQRYKGLGEMNPNDLW
ETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV

NT seq 2322 nt +upstreamnt +downstreamnt
atgcaaaattaccagagccatagtattaaggttttaaaaggcttagagggggttaggaaa
cgccctggaatgtatattggcgataccaatgtgggtgggttgcaccacatggtgtatgaa
gtcgtggataacgctgtagatgagagcatggcgggtttttgcgatacgattaatatcact
ttgactgatgagggttcatgcattgtagaagataacgggcgaggcattcctgtagatatt
caccccacggaaagaatccccgcttgcaccgtggttttaacgattttgcatgcggggggc
aagtttgataacgatacttataaagtttcaggcggtttgcatggcgtgggcgtttcggtt
gtgaacgctttaagcaaacgcttgattatgaccattaaaaaagagggtcaaatctaccgc
caagagtttgaaaagggtattcctactagcgagcttgaaatcattggcaaaaccaaaagc
actaaagaaagcggcacgaccattgaatttttccctgatgaaagcgtgatggaagtcgtt
gaatttcaagcgggtattttgcaaaaacgcttcaaagaaatggcgtatcttaatgacggc
ttaaaaatttctttcaaagaagaaaaaacccaactgcaagagacttatttctatgaagac
ggcttgaaacaattcgttaaagacagcgctaaaaaagaattgctcacccccattatttcg
tttaaaaacatggatgaagaaacgcgcacttctatagaggtcgctttggcgtatactgat
gattacaatgaaaatactttaagctttgtgaataacattaaaacttctgagggcggcacg
catgaggcgggctttaaaatgggcttgtctaaggcgattttacaatatattgacaataac
attaaaaccaaagagtcacgccccatttctgaagacattaaagagggcttgatcgctgtt
gtgagcttgaaaatgagcgagcctttgtttgaagggcagactaaatccaaactcggcagt
tcgtatgcgcgcgcgttggtttcaaaattagtctatgataaaatccatcaatttttagaa
gaaaaccctaacgaagctaaaatcatcgctaataaagccctactagctgcaaaggctaga
gaagccagtaagaaagccagagagcttacaaggaaaaaagataatttgagtgtcggcact
ttgcctggaaaattagccgattgccagagtaaagaccccttagagagtgagatcttttta
gtggagggcgatagcgcgggcgggagcgctaaacaagggcgcgatagggttttccaagcg
atcttgcccttaaaaggtaagattttaaatgtggaaaaaagccatttgtcaaagatccta
aaatcagaagaaattaaaaacatgatcacggcttttgggtgcggcattcaagagagtttt
gatatagaaagattgcgctatcataaaatcattatcatgaccgatgctgatgtggatggg
agccatatccaaaccttgctgatgacttttttctatcgttatttacgcccgctgattgaa
caagggcatgtttatatcgctcaagcccctctttataaatacaagaaaggcaagacagaa
atctatcttaaagacagcgtcgctttggatcattttttaattgagcatggcatcaattcg
gtggatattgaagggattggcaagaacgatttgatgaatttattaaaagtggtacgccat
taccgctacgcgcttttggaattagaaaaacgctacaatttgctagaaattttacgcttt
ttgattgaaactaaggacgccttaagccttgatatgaaagttttagaaaaaagcattttg
gaaaaattagagggcttgaattatcagatcttacgctcttttgccactgaagaaagcttg
catttgcacacgcaaacccctaaaggcttggtggaatttaacctagatgacaacctcttt
aaagaagtgttgtttgaagaagcgcattacacttaccaaaaacttatggaatataattta
gatttcttagaaaataaggatattttggcgtttttagaagaagtggaaaattacgctaaa
aagggagcgaatatccaacgctataaggggctaggcgagatgaaccctaatgatttgtgg
gaaacgaccatgcataaagaaaaccgcagcttgattaaactcaaaattgaagatttagaa
aaaaccgatgcagtcttttcgctttgcatgggcgatgaagtagagcctagaagagccttt
atccaagcgcatgctaaagacgtgaaacagctagatgtgtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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