KEGG   Helicobacter pylori 83: HMPREF0462_0268
Entry
HMPREF0462_0268   CDS       T01915                                 
Symbol
gidA
Name
(GenBank) tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
  KO
K03495  tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Organism
hpx  Helicobacter pylori 83
Brite
KEGG Orthology (KO) [BR:hpx00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:hpx03016]
    HMPREF0462_0268 (gidA)
   03036 Chromosome and associated proteins [BR:hpx03036]
    HMPREF0462_0268 (gidA)
Transfer RNA biogenesis [BR:hpx03016]
 Eukaryotic type
  tRNA modification factors
   Other tRNA modification factors
    HMPREF0462_0268 (gidA)
 Prokaryotic type
    HMPREF0462_0268 (gidA)
Chromosome and associated proteins [BR:hpx03036]
 Prokaryotic type
  Chromosome partitioning proteins
   Other chromosome partitioning proteins
    HMPREF0462_0268 (gidA)
SSDB
Motif
Pfam: GIDA GIDA_C GIDA_C_1st Pyr_redox_3 Pyr_redox_2 FAD_oxidored AlaDh_PNT_C HI0933_like Pyr_redox FAD_binding_2
Other DBs
NCBI-ProteinID: AEE69873
UniProt: F4D407
Position
complement(254878..256743)
AA seq 621 aa
MVKESDILVIGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE
VDVLGGAMGIITDNSGLQYRVLNASKGPAVRGTRAQIDMDTYRIFARNLVLNTPNLSVSQ
EMTESLIIENDEVVGVRTNINNTYKAKKVIITTGTFLKGVVHIGTHQNQNGRFGENASNS
LALNLRELGFKVERLKTGTCPRVAGNSIDFEGLEEHFGDTTPPYFSYKTKDFNPTQLSCF
ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH
KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK
GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQDPFILKRNEAYIGVLIDDLVTKGTN
EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDQQEIQDHLKRLKEC
VLTPSKEVLKRLNELDENPINDKVDGVSLLARNSFNLEKMRSFFSFLTPLNERVLEQIKI
ECKYNIYIEKQHENIAKMDSMLKVSIPKNFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI
SGITPANLDVLHLYIHLRKNS
NT seq 1866 nt   +upstreamnt  +downstreamnt
gtggtaaaagaaagtgatattttagtgattggtggggggcatgcaggcattgaagcgagc
ttgattgcagccaaaatgggggctagagtgcatctcatcaccatgctcatagacacgatc
ggtttagcaagctgtaacccagcgattggaggcttgggtaaagggcatttgactaaagaa
gtggatgttttagggggggctatggggattattacggataatagcggtttgcaatatcgt
gtgttaaacgcttctaaagggccggcagttagagggactagagcgcaaattgatatggat
acttaccgcatttttgcaaggaatcttgttttaaacacccctaatttgagcgtttctcaa
gaaatgactgaaagtttaatcattgaaaatgatgaggtagtgggcgtaaggacgaacatt
aacaacacttataaagctaaaaaagtgatcatcaccacaggcacttttttaaaaggggtg
gtgcatattggcacgcaccaaaaccaaaacgggcgctttggggaaaacgcttctaattct
ttagccttgaatttaagggagcttggctttaaggtggaaaggttaaaaaccggcacttgc
ccaagagtggcaggcaatagcattgattttgaaggcttagaggagcattttggggacaca
acccccccctatttcagctataaaaccaaagattttaaccccacccaactctcatgtttt
atcacttacaccaaccccattacccaccaaatcattagggataatttccaccgagccccc
ctatttagcggtcaaattgaaggcataggcccaaggtattgccctagcattgaagataag
atcaaccgcttcagcgaaaaagaacgccaccagctgtttttagagcctcaaaccatccac
aaaagcgaatattatatcaacggcttaagcacctctttacccctagatgtgcaagaaaaa
gtcattcattctatcaaaggcttagaaaacgccctcatcacgcgctatggctatgcgata
gagtatgattttatccagcccacggaattgacccacactttagaaaccaaaaaaatcaaa
gggctttatttggccgggcaaatcaatgggactaccggctatgaagaagcggcggctcaa
gggcttatggctgggattaatgcggtattagccttaaagaatcaagacccctttattttg
aaacgcaatgaagcttatatcggcgtgttgattgatgatttggttactaaaggcacgaat
gagccttacagaatgtttaccagccgagccgaataccgcttgcttttaagagaggacaac
acgctttttaggttaggcgaacatgcctatcgtttagggcttatggaagaggatttttat
aaggaattgaaaaaagaccaacaagaaatacaagaccatctcaaacgccttaaagaatgc
gtccttacccccagtaaagaagtgttaaaacgcttgaatgaattagacgaaaaccctatc
aatgacaaggttgatggcgttagccttttagcgcgcaatagttttaatctagaaaaaatg
cgctcctttttcagctttttaacgcctttgaatgagcgggttttagagcagattaaaatt
gaatgcaaatataatatttatattgaaaagcaacacgaaaatatcgctaaaatggatagc
atgctcaaagtttctatccctaaaaattttgtgtttaaaggcattccaggcctaagctta
gaagcggtagaaaagttagaaaaattccgccccaaaagcctttttgaagcctcagaaatc
agcgggatcaccccggcgaatttagatgttttgcatttatacatccatttgcgaaaaaac
tcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (27)   

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