KEGG   Helicobacter pylori Aklavik117: HPAKL117_05220
Entry
HPAKL117_05220    CDS       T02352                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
hpya  Helicobacter pylori Aklavik117
Pathway
hpya03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hpya00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HPAKL117_05220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpya03400]
    HPAKL117_05220
DNA repair and recombination proteins [BR:hpya03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HPAKL117_05220
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      HPAKL117_05220
SSDB
Motif
Pfam: UvrB_inter Helicase_C UvrB ResIII UVR DEAD AAA_30 Microtub_bd DUF87 AAA_7 SWI2_SNF2 Kinesin DUF5923 DUF4252 UBA SLFN-g3_helicase
Other DBs
NCBI-ProteinID: AFX91438
UniProt: K7YE50
Position
complement(1101983..1103959)
AA seq 658 aa
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDSLEKNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGL
LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHHITPKTVTRALEEELK
LRDDEIKIAKALKKDKIPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
NT seq 1977 nt   +upstreamnt  +downstreamnt
atgcctttatttgatttaaaaagcccttacccaccagcaggcgatcagccccaagccata
gaagccttaacgaaaagcttgaaaaataacaaccattatcaaactttagtgggggttaca
gggagtggtaaaacttatacgatggccaatatcatcgctaatatcaacaaacccactctg
atcatgagccataataagaccttatgcgcgcagctttatagcgagtttaaggcgtttttc
ccgcataatagggtggagtattttatctcccactttgactactaccagcctgaaagctat
atccctagaagggatttattcattgaaaaagacagctctattaatgatgatttagagcgt
ttgagattgagcgcgaccacctcacttttaggttatgatgatgtgatcgtgatagcgagc
gtttcggctaattatggtttgggtaaccctgaagaatatttaaaagtcatggaaaaaatc
aaagtaggcgagaagcgcgcttataagagctttttattaaagctagtagaaatgggttat
agccgtaatgaagtggtgtttgatagggggagttttagagcgaccggagaatgcgtggat
attttccccgcttataatgacgctgaatttatcagaattgaattttttggcgatgagata
gaaaggattgctgtctttgactctttagaaaaaaatgaaatcaagcgcttggattctgtc
atgctttatgcggccagtcagtttgctgtagggagtgagaggttgaatttagccattaaa
agcattgaagatgaactcgctttaagattgaaattttttaaagagcaggataaaatgctt
gaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatgattagcgcaaccggt
gtgtgtaagggcattgaaaattatgcgcgccattttacaggcaaagcccctaatgaaacg
cctttttgcttgtttgattatttagggatatttgagcgggagtttttagtcattgtggat
gaaagccatgtgagtttgccgcagtttggggggatgtatgcaggggatatgagcaggaaa
agcgttttagtggaatatggttttagattgcctagcgctttagacaaccgccctttaaaa
tttgatgaatttatccataaaaattgccagttcctttttgtgtccgctacgcccaataag
ctagaattagagctttccaaaaagaatgtcgctgagcaaatcattcgccctacagggctt
ttagaccctaaatttgaagtgcgagacagcgataagcaagtccaggatttatttgatgaa
atcaagttagtggtggctagagatgaaagggtgcttatcaccacgctcactaaaaaaatg
gcagaagaattgtgcaaatattatgctgaatggggcttgaaagcgcgttacatgcatagt
gaaattgatgcgattgaaaggaatcacatcatccgctctttaaggcttaaagaatttgac
attttaatagggatcaatctcttaagagaagggctggatttgcctgaagtctctttagta
gcgatcatggatgcggataaagaagggtttttaaggagtgaaacaagcctcattcaaacc
atggggcgagccgccagaaacgctaatggcaaggttttattatacgctaaaaaaatcact
caaagcatgcaaaaagcctttgaaattacaagctacaggcgcgctaagcaagaagaattt
aataaacttcatcatatcacccccaaaaccgttactcgcgctttagaagaggagttgaaa
ttaagagatgatgagattaaaatcgctaaagccttaaaaaaggacaaaatccctaaaagc
gaaagggaaaaaatcattaaagaattggataaaaaaatgcgagaatgcgcgaaaaatttg
gattttgaagaagcgatgcgtttgagagatgaaatcgctaaattaagaacgctttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (24)   

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