KEGG   Helicobacter pylori oki154: HPOKI154_05305
Entry
HPOKI154_05305    CDS       T03725                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
hpye  Helicobacter pylori oki154
Pathway
hpye03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hpye00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    HPOKI154_05305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hpye03400]
    HPOKI154_05305
Enzymes [BR:hpye01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     HPOKI154_05305
DNA repair and recombination proteins [BR:hpye03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     HPOKI154_05305
SSDB
Motif
Pfam: DEAD ResIII PriA_C Helicase_C PriA_CRR PriA_3primeBD AAA_22 AAA_19 ADDB_N nSTAND3 PhoH AAA_7 AAA_30 TsaE zf-C3HC4_3
Other DBs
NCBI-ProteinID: AHN39308
Position
complement(1070556..1072415)
AA seq 619 aa
MFYHLIAPLKNKTPPLTYFSKERHQKGALVNIPLRNKTLLGVVLEEVSKPSFECLELEKT
PYFLLPFQIELATFVAQYYSANLSSVLSLFTPFKECDLVGLEKIEPVLNALSQTQTNALK
ELQKHSASLLFGDTGSGKTEIYMHSIAQTLEQKKSALLLVPEIALTPQMQQRLKRVFKEN
LGLWHSKLFQTQKKQFLERLYSQEIKLVVGTRSALFLPLKELGLIIVDEEHDFSYKSHQS
PMYNARDLCLYLSHKFPIQVILGSATPSLNSYKRFKDKALVRLKGRYTPTQKNIIFEKTE
RFITPKLLEVLKQVIDKNEQAIIFVPTRANFKTLLCQNCYKSVQCPFCSVNMSLHLKTHK
LMCHYCHFSNPIPKTCSACQSEVLVGKRIGTMQVLNELEGLLKGAKIAILDKDHTSTPKK
LHNILNDFNAQKTNILIGTQMISKGHDYAKVSLAVVLGIDNIIKSNSYRALEEGVSLLYQ
IAGRSARQISGQVFIQSTETDLLENFLEDYEDFLQYELQERCELYPPFSRLCLLEFKHKN
EEKAQQLSLKASQTLSSCLEKGVTLSSFKAPIEKIASSYRYLILLRSKNPLSLIKSVHAF
LKTAPNIPCSVNMDPVDIF
NT seq 1860 nt   +upstreamnt  +downstreamnt
atgttctatcacttaatcgctcctttaaaaaataaaaccccccctttaacttacttttct
aaggagcggcaccaaaaaggagcgttagtcaatatccctttaaggaataaaacgcttttg
ggcgtcgttcttgaagaagtttcaaaaccctcttttgaatgcctagaactggaaaaaacc
ccttattttttactcccctttcaaatagaactcgctacttttgttgctcaatattactcg
gccaatctttcttcagtcttaagcctttttaccccttttaaagaatgcgatttggtgggg
ttagaaaaaattgagcctgttcttaatgcgttaagccaaacgcaaacaaacgctttaaaa
gaattgcaaaaacattcagcaagcttgctttttggcgatacgggtagcgggaaaaccgag
atttatatgcattcaatcgctcaaactttagagcaaaaaaaaagcgctttattgttagtg
ccagaaatcgctctcacccctcaaatgcaacaacgccttaaaagggtttttaaagaaaat
ttaggcttgtggcatagcaaactctttcaaacccaaaaaaaacaatttttagaaaggctt
tattcgcaagaaatcaaattagtggtaggcacacgaagcgcgttgtttttaccccttaag
gagttgggtttaatcattgtagatgaagagcatgacttttcttataaatcccatcaaagc
cccatgtataacgctagggatttatgcttgtatttatcccataaattccctattcaagtg
attttaggctctgctacgccaagtttaaatagttacaaacgctttaaagataaggcttta
gtgcgcttaaaggggcgctacacccctacgcaaaaaaacattatttttgaaaaaaccgag
cgttttatcacgcccaaactcctagaagtgctaaaacaagttatagacaaaaacgagcaa
gccattatttttgtgcctacaagggctaatttcaaaaccttgctgtgtcaaaattgctat
aaaagcgttcaatgccccttttgcagcgtgaatatgagtttgcatttaaaaacccacaaa
ctcatgtgccattattgccatttttcaaaccctatccctaaaacttgcagcgcgtgtcaa
agcgaggttttagtgggtaaaaggataggaaccatgcaagtgttgaacgagttggaaggc
cttttgaaaggcgctaaaatagccattttagataaagatcataccagcacgccaaaaaaa
ctccacaatattttaaacgatttcaacgctcaaaaaaccaatatcttaatcggcactcaa
atgataagcaaagggcatgattacgctaaagtgagtttagcggttgttttaggcatagac
aatatcattaaatctaatagttacagggctttagaagaaggcgtgtcgttactttatcaa
atcgctgggaggagcgctaggcaaatttctggccaagtgttcattcaaagcaccgaaacg
gatctattagaaaattttttagaagattatgaagattttttacaatacgaattgcaagaa
aggtgcgaactctacccgcctttttcaaggctgtgtttgttagaatttaagcataaaaac
gaagaaaaagcccaacaattgagcctaaaagcctctcaaaccctttcttcgtgtttagaa
aagggcgtaacgctctctagctttaaagcccccattgaaaaaatcgcttcttcttatcgc
taccttattttattgcgttccaaaaaccctttaagcctaatcaaaagcgtgcatgcgttt
ttaaaaaccgctcctaatatcccttgcagcgtgaatatggatcctgtggatattttttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (24)   

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